Gene annotation
Transcriptome id Sobic.001G304300.1
Synonym Sb01g029630
Functional annotation LTPL138 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
UniProt C5WSJ6
Pfam PF14547
Panther DB PTHR31731 PTHR31731:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G12490 : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
RAP-DB (Rice) LOC_Os03g01320.1 : LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed
MaizeGDB (Corn) Zm00025a003290
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G321200 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.009G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.001G004800 receptor protein kinase, putative, expressed -
4 Sobic.002G201600 methyltransferase, putative, expressed -
5 Sobic.004G266200 Homologous to Dof genes in Arabidopsis and rice.(PubMedID : 21161392)@dof zinc finger domain containing protein, putative, expressed -
6 Sobic.006G190600 heavy metal-associated domain containing protein, expressed -
7 Sobic.001G481000 expressed protein -
8 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
9 Sobic.005G142500 plant protein of unknown function domain containing protein, expressed -
10 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
11 Sobic.010G044400 Up-reguralion under heat(PubMedID : 24916767)@GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.003G027400 VQ domain containing protein, putative, expressed -
13 Sobic.007G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AIR12, putative, expressed -
14 Sobic.006G137800 expressed protein -
15 Sobic.001G025101 - -
16 Sobic.004G203700 ubiquitin family protein, putative, expressed -
17 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G218300 expressed protein -
19 Sobic.004G050700 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.003G088500 multicopper oxidase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G304300 Sobic001G304300 Sobic003G321200 Sobic003G321200 Sobic001G304300--Sobic003G321200 Sobic009G248100 Sobic009G248100 Sobic001G304300--Sobic009G248100 Sobic001G004800 Sobic001G004800 Sobic001G304300--Sobic001G004800 Sobic002G201600 Sobic002G201600 Sobic001G304300--Sobic002G201600 Sobic004G266200 Sobic004G266200 Sobic001G304300--Sobic004G266200 Sobic006G190600 Sobic006G190600 Sobic001G304300--Sobic006G190600 Sobic001G481000 Sobic001G481000 Sobic001G304300--Sobic001G481000 Sobic003G417800 Sobic003G417800 Sobic001G304300--Sobic003G417800 Sobic005G142500 Sobic005G142500 Sobic001G304300--Sobic005G142500 Sobic003G321200--Sobic001G481000 Sobic001G435000 Sobic001G435000 Sobic003G321200--Sobic001G435000 Sobic003G321200--Sobic003G417800 Sobic006G092500 Sobic006G092500 Sobic003G321200--Sobic006G092500 Sobic003G027400 Sobic003G027400 Sobic003G321200--Sobic003G027400 Sobic010G259600 Sobic010G259600 Sobic003G321200--Sobic010G259600 Sobic004G166700 Sobic004G166700 Sobic003G321200--Sobic004G166700 Sobic004G100700 Sobic004G100700 Sobic003G321200--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic003G321200--Sobic005G099000 Sobic009G248100--Sobic003G027400 Sobic009G248100--Sobic003G321200 Sobic001G325400 Sobic001G325400 Sobic009G248100--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic009G248100--Sobic009G035200 Sobic009G229000 Sobic009G229000 Sobic009G248100--Sobic009G229000 Sobic003G117600 Sobic003G117600 Sobic009G248100--Sobic003G117600 Sobic009G248100--Sobic006G092500 Sobic009G111000 Sobic009G111000 Sobic009G248100--Sobic009G111000 Sobic006G039100 Sobic006G039100 Sobic009G248100--Sobic006G039100 Sobic004G203700 Sobic004G203700 Sobic001G004800--Sobic004G203700 Sobic002G353800 Sobic002G353800 Sobic001G004800--Sobic002G353800 Sobic006G137800 Sobic006G137800 Sobic001G004800--Sobic006G137800 Sobic001G313200 Sobic001G313200 Sobic001G004800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic001G004800--Sobic002G389400 Sobic001G112200 Sobic001G112200 Sobic001G004800--Sobic001G112200 Sobic004G301300 Sobic004G301300 Sobic001G004800--Sobic004G301300 Sobic001G529400 Sobic001G529400 Sobic001G004800--Sobic001G529400 Sobic002G055700 Sobic002G055700 Sobic001G004800--Sobic002G055700 Sobic001G533400 Sobic001G533400 Sobic002G201600--Sobic001G533400 Sobic010G001900 Sobic010G001900 Sobic002G201600--Sobic010G001900 Sobic001G339700 Sobic001G339700 Sobic002G201600--Sobic001G339700 Sobic008G025600 Sobic008G025600 Sobic002G201600--Sobic008G025600 Sobic009G120000 Sobic009G120000 Sobic002G201600--Sobic009G120000 Sobic002G201600--Sobic006G137800 Sobic010G209900 Sobic010G209900 Sobic002G201600--Sobic010G209900 Sobic004G273400 Sobic004G273400 Sobic002G201600--Sobic004G273400 Sobic002G416600 Sobic002G416600 Sobic002G201600--Sobic002G416600 Sobic001G295800 Sobic001G295800 Sobic004G266200--Sobic001G295800 Sobic004G266200--Sobic001G304300 Sobic006G211200 Sobic006G211200 Sobic004G266200--Sobic006G211200 Sobic001G016500 Sobic001G016500 Sobic004G266200--Sobic001G016500 Sobic002G218300 Sobic002G218300 Sobic004G266200--Sobic002G218300 Sobic004G266200--Sobic009G248100 Sobic002G320800 Sobic002G320800 Sobic004G266200--Sobic002G320800 Sobic004G266200--Sobic001G481000 Sobic010G211600 Sobic010G211600 Sobic004G266200--Sobic010G211600 Sobic006G190600--Sobic001G481000 Sobic003G117500 Sobic003G117500 Sobic006G190600--Sobic003G117500 Sobic006G190600--Sobic001G304300 Sobic006G190600--Sobic005G142500 Sobic006G190600--Sobic001G295800 Sobic002G350500 Sobic002G350500 Sobic006G190600--Sobic002G350500 Sobic006G190600--Sobic003G321200 Sobic005G004700 Sobic005G004700 Sobic006G190600--Sobic005G004700 Sobic002G247800 Sobic002G247800 Sobic006G190600--Sobic002G247800 Sobic001G304100 Sobic001G304100 Sobic001G481000--Sobic001G304100 Sobic001G310300 Sobic001G310300 Sobic001G481000--Sobic001G310300 Sobic010G184800 Sobic010G184800 Sobic001G481000--Sobic010G184800 Sobic001G481000--Sobic004G203700 Sobic009G188000 Sobic009G188000 Sobic001G481000--Sobic009G188000 Sobic001G481000--Sobic003G027400 Sobic001G481000--Sobic003G321200 Sobic002G213600 Sobic002G213600 Sobic001G481000--Sobic002G213600 Sobic003G160700 Sobic003G160700 Sobic001G481000--Sobic003G160700 Sobic001G476500 Sobic001G476500 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic009G183400 Sobic009G183400 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic001G119400 Sobic001G119400 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic006G099900 Sobic006G099900 Sobic003G417800--Sobic006G099900 Sobic003G352300 Sobic003G352300 Sobic003G417800--Sobic003G352300 Sobic009G240600 Sobic009G240600 Sobic003G417800--Sobic009G240600 Sobic004G170800 Sobic004G170800 Sobic005G142500--Sobic004G170800 Sobic004G050700 Sobic004G050700 Sobic005G142500--Sobic004G050700 Sobic001G264300 Sobic001G264300 Sobic005G142500--Sobic001G264300 Sobic001G264400 Sobic001G264400 Sobic005G142500--Sobic001G264400 Sobic003G427700 Sobic003G427700 Sobic005G142500--Sobic003G427700 Sobic005G051600 Sobic005G051600 Sobic005G142500--Sobic005G051600 Sobic005G142500--Sobic002G247800 Sobic009G221800 Sobic009G221800 Sobic005G142500--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic005G142500--Sobic009G130300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.