Gene annotation
Transcriptome id Sobic.004G266200.1
Synonym Sb04g030420, DOF5.6, DNA binding with One Finger, SbDof17, HCA2
Functional annotation Homologous to Dof genes in Arabidopsis and rice. (PubMedID : 21161392)
dof zinc finger domain containing protein, putative, expressed
UniProt C5Y0A5 , R4N5W5 , E6PBM4
Pfam PF02701
Panther DB PTHR31992 PTHR31992:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G62940 : Dof-type zinc finger DNA-binding family protein
RAP-DB (Rice) LOC_Os02g47810.1 : dof zinc finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a049197 , Zm00025a004485 , Zm00025a009285 , Zm00025a047370 , Zm00025a017356 , Zm00025a007115 , Zm00025a032602 , Zm00025a007401 , Zm00025a021490 , Zm00025a056781 , Zm00025a023031 , Zm00025a052752 , Zm00025a006464 , Zm00025a039572 , Zm00025a016727 , Zm00025a002866 , Zm00025a014147 , Zm00025a021740 , Zm00025a017302 , Zm00025a001854 , Zm00025a000851 , Zm00025a021884 , Zm00025a032473 , Zm00025a057389 , Zm00025a014756 , Zm00025a008288 , Zm00025a004967 , Zm00025a048181 , Zm00025a026723 , Zm00025a043793
Brachypodium KQK22335 , KQK14158 , PNT73247 , PNT69224 , KQK00955 , KQK16070 , KQK13036 , PNT65625 , PNT65624 , KQJ98766 , PNT69485 , KQJ90639 , KQK03138 , KQJ97295 , KQK06036 , KQK14319 , KQK23432 , KQK00737 , KQJ84092 , KQK00738
Barley HORVU2Hr1G013060.1 , HORVU2Hr1G119160.6 , HORVU2Hr1G119160.4 , HORVU2Hr1G119160.2 , HORVU2Hr1G119160.3 , HORVU2Hr1G119160.1 , HORVU1Hr1G044560.1 , HORVU4Hr1G074990.3 , HORVU4Hr1G074990.2 , HORVU4Hr1G074990.1 , HORVU1Hr1G074140.1 , HORVU3Hr1G083460.1 , HORVU4Hr1G013890.1 , HORVU6Hr1G065250.4 , HORVU6Hr1G065250.5 , HORVU6Hr1G065250.6 , HORVU6Hr1G065250.7 , HORVU5Hr1G048700.1 , HORVU6Hr1G065250.2 , HORVU6Hr1G065250.3 , HORVU6Hr1G065250.8 , HORVU6Hr1G065250.9 , HORVU2Hr1G119110.3 , HORVU2Hr1G119110.7 , HORVU2Hr1G119110.6 , HORVU2Hr1G119110.5 , HORVU2Hr1G119110.4 , HORVU2Hr1G119110.9 , HORVU2Hr1G119110.8 , HORVU6Hr1G065250.1 , HORVU5Hr1G097620.1 , HORVU7Hr1G043250.2 , HORVU5Hr1G097600.1 , HORVU6Hr1G065250.10
Wheat TraesCS5B02G154100 , TraesCS2A02G402200 , TraesCS4B02G206800 , TraesCS2D02G563000 , TraesCS4A02G097800 , TraesCS5A02G155900 , TraesCS4B02G286400 , TraesCS2D02G563400 , TraesCS6D02G236700 , TraesCS2D02G563200 , TraesCS6B02G301500 , TraesCS4D02G285100 , TraesCS2B02G592600 , TraesCS4D02G207600 , TraesCS2D02G399500 , TraesCS2B02G592900 , TraesCS2A02G590800 , TraesCS2B02G592800 , TraesCS4A02G017700 , TraesCS6A02G274000 , TraesCS2B02G592700 , TraesCS2A02G591200 , TraesCS5D02G161000 , TraesCS5B02G492600 , TraesCS6D02G254200 , TraesCS6B02G270100 , TraesCS2B02G420400 , TraesCS6A02G255500
Populus PNT43441


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G295800 expressed protein -
2 Sobic.001G304300 LTPL138 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.006G211200 expressed protein -
4 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
5 Sobic.002G218300 expressed protein -
6 Sobic.009G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G320800 expressed protein -
8 Sobic.001G481000 expressed protein -
9 Sobic.010G211600 Up-reguralion under heat(PubMedID : 24916767)@gp176, putative, expressed -
10 Sobic.004G203700 ubiquitin family protein, putative, expressed -
11 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
12 Sobic.004G176600 no apical meristem protein, putative, expressed -
13 Sobic.005G142500 plant protein of unknown function domain containing protein, expressed -
14 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
15 Sobic.007G019000 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
16 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
17 Sobic.006G138100 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
18 Sobic.009G130300 AWPM-19-like membrane family protein, putative, expressed -
19 Sobic.002G201600 methyltransferase, putative, expressed -
20 Sobic.005G043000 heat shock protein-related, putative, expressed -


Gene co-expression network
sample Sobic004G266200 Sobic004G266200 Sobic001G295800 Sobic001G295800 Sobic004G266200--Sobic001G295800 Sobic001G304300 Sobic001G304300 Sobic004G266200--Sobic001G304300 Sobic006G211200 Sobic006G211200 Sobic004G266200--Sobic006G211200 Sobic001G016500 Sobic001G016500 Sobic004G266200--Sobic001G016500 Sobic002G218300 Sobic002G218300 Sobic004G266200--Sobic002G218300 Sobic009G248100 Sobic009G248100 Sobic004G266200--Sobic009G248100 Sobic002G320800 Sobic002G320800 Sobic004G266200--Sobic002G320800 Sobic001G481000 Sobic001G481000 Sobic004G266200--Sobic001G481000 Sobic010G211600 Sobic010G211600 Sobic004G266200--Sobic010G211600 Sobic005G043000 Sobic005G043000 Sobic001G295800--Sobic005G043000 Sobic001G514200 Sobic001G514200 Sobic001G295800--Sobic001G514200 Sobic001G295800--Sobic001G481000 Sobic003G307400 Sobic003G307400 Sobic001G295800--Sobic003G307400 Sobic001G310300 Sobic001G310300 Sobic001G295800--Sobic001G310300 Sobic009G221800 Sobic009G221800 Sobic001G295800--Sobic009G221800 Sobic009G130300 Sobic009G130300 Sobic001G295800--Sobic009G130300 Sobic003G052900 Sobic003G052900 Sobic001G295800--Sobic003G052900 Sobic001G295800--Sobic009G248100 Sobic003G321200 Sobic003G321200 Sobic001G304300--Sobic003G321200 Sobic001G304300--Sobic009G248100 Sobic001G004800 Sobic001G004800 Sobic001G304300--Sobic001G004800 Sobic002G201600 Sobic002G201600 Sobic001G304300--Sobic002G201600 Sobic001G304300--Sobic004G266200 Sobic006G190600 Sobic006G190600 Sobic001G304300--Sobic006G190600 Sobic001G304300--Sobic001G481000 Sobic003G417800 Sobic003G417800 Sobic001G304300--Sobic003G417800 Sobic005G142500 Sobic005G142500 Sobic001G304300--Sobic005G142500 Sobic006G147000 Sobic006G147000 Sobic006G211200--Sobic006G147000 Sobic003G321700 Sobic003G321700 Sobic006G211200--Sobic003G321700 Sobic007G190800 Sobic007G190800 Sobic006G211200--Sobic007G190800 Sobic007G019000 Sobic007G019000 Sobic006G211200--Sobic007G019000 Sobic004G322200 Sobic004G322200 Sobic006G211200--Sobic004G322200 Sobic010G259900 Sobic010G259900 Sobic006G211200--Sobic010G259900 Sobic007G212600 Sobic007G212600 Sobic006G211200--Sobic007G212600 Sobic001G016400 Sobic001G016400 Sobic006G211200--Sobic001G016400 Sobic003G322400 Sobic003G322400 Sobic006G211200--Sobic003G322400 Sobic009G050300 Sobic009G050300 Sobic001G016500--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic001G016500--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic001G016500--Sobic002G081600 Sobic002G379500 Sobic002G379500 Sobic001G016500--Sobic002G379500 Sobic003G346600 Sobic003G346600 Sobic001G016500--Sobic003G346600 Sobic001G018900 Sobic001G018900 Sobic001G016500--Sobic001G018900 Sobic001G016500--Sobic001G016400 Sobic004G008400 Sobic004G008400 Sobic001G016500--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic001G016500--Sobic007G197800 Sobic002G218300--Sobic009G130300 Sobic003G194200 Sobic003G194200 Sobic002G218300--Sobic003G194200 Sobic001G071100 Sobic001G071100 Sobic002G218300--Sobic001G071100 Sobic009G224500 Sobic009G224500 Sobic002G218300--Sobic009G224500 Sobic007G002800 Sobic007G002800 Sobic002G218300--Sobic007G002800 Sobic003G160700 Sobic003G160700 Sobic002G218300--Sobic003G160700 Sobic003G305700 Sobic003G305700 Sobic002G218300--Sobic003G305700 Sobic002G092600 Sobic002G092600 Sobic002G218300--Sobic002G092600 Sobic002G218300--Sobic004G266200 Sobic003G027400 Sobic003G027400 Sobic009G248100--Sobic003G027400 Sobic009G248100--Sobic003G321200 Sobic001G325400 Sobic001G325400 Sobic009G248100--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic009G248100--Sobic009G035200 Sobic009G229000 Sobic009G229000 Sobic009G248100--Sobic009G229000 Sobic003G117600 Sobic003G117600 Sobic009G248100--Sobic003G117600 Sobic006G092500 Sobic006G092500 Sobic009G248100--Sobic006G092500 Sobic009G111000 Sobic009G111000 Sobic009G248100--Sobic009G111000 Sobic006G039100 Sobic006G039100 Sobic009G248100--Sobic006G039100 Sobic003G219800 Sobic003G219800 Sobic002G320800--Sobic003G219800 Sobic002G320800--Sobic001G016500 Sobic006G156000 Sobic006G156000 Sobic002G320800--Sobic006G156000 Sobic003G429000 Sobic003G429000 Sobic002G320800--Sobic003G429000 Sobic003G109600 Sobic003G109600 Sobic002G320800--Sobic003G109600 Sobic002G047600 Sobic002G047600 Sobic002G320800--Sobic002G047600 Sobic006G216600 Sobic006G216600 Sobic002G320800--Sobic006G216600 Sobic003G436700 Sobic003G436700 Sobic002G320800--Sobic003G436700 Sobic004G062500 Sobic004G062500 Sobic002G320800--Sobic004G062500 Sobic001G304100 Sobic001G304100 Sobic001G481000--Sobic001G304100 Sobic001G481000--Sobic001G310300 Sobic010G184800 Sobic010G184800 Sobic001G481000--Sobic010G184800 Sobic004G203700 Sobic004G203700 Sobic001G481000--Sobic004G203700 Sobic009G188000 Sobic009G188000 Sobic001G481000--Sobic009G188000 Sobic001G481000--Sobic003G027400 Sobic001G481000--Sobic003G321200 Sobic002G213600 Sobic002G213600 Sobic001G481000--Sobic002G213600 Sobic001G481000--Sobic003G160700 Sobic002G004900 Sobic002G004900 Sobic010G211600--Sobic002G004900 Sobic003G280200 Sobic003G280200 Sobic010G211600--Sobic003G280200 Sobic008G027600 Sobic008G027600 Sobic010G211600--Sobic008G027600 Sobic008G158100 Sobic008G158100 Sobic010G211600--Sobic008G158100 Sobic008G172600 Sobic008G172600 Sobic010G211600--Sobic008G172600 Sobic005G177600 Sobic005G177600 Sobic010G211600--Sobic005G177600 Sobic003G417700 Sobic003G417700 Sobic010G211600--Sobic003G417700 Sobic001G318500 Sobic001G318500 Sobic010G211600--Sobic001G318500 Sobic002G139300 Sobic002G139300 Sobic010G211600--Sobic002G139300
Octagon: transcription factors


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