Gene annotation
Transcriptome id Sobic.001G328500.1
Synonym Sb01g031790, lateral organ boundaries, SbLBD6, LBD37, ASL39
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by BR treatment" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt C5WVK7
Pfam PF03195
Panther DB PTHR31304 PTHR31304:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67420 : LOB domain-containing protein 37
RAP-DB (Rice) LOC_Os03g33090.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048595 , Zm00025a015069 , Zm00025a007419 , Zm00025a002995
Brachypodium KQJ88280 , KQK15457 , KQK14217
Barley HORVU2Hr1G035160.4 , HORVU2Hr1G035160.1 , HORVU4Hr1G013380.1 , HORVU4Hr1G013380.3 , HORVU4Hr1G013380.2 , HORVU4Hr1G013380.5 , HORVU4Hr1G013380.4 , HORVU4Hr1G013380.6 , HORVU3Hr1G016320.1 , HORVU2Hr1G035160.5 , HORVU2Hr1G035160.3 , HORVU2Hr1G035160.2
Wheat TraesCS2A02G194500 , TraesCS2B02G212400 , TraesCS4A02G236200 , TraesCS4D02G077600 , TraesCS4B02G078800 , TraesCS2D02G193400 , TraesCS2D02G193400
Populus -


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cDNA sequences
Sobic.001G328500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G064600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
2 Sobic.010G179800 OsFBK16 - F-box domain and kelch repeat containing protein, expressed -
3 Sobic.001G072800 expressed protein -
4 Sobic.004G151400 glycosyl transferase 8 domain containing protein, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
5 Sobic.002G376000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
6 Sobic.001G463100 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G024500 uncharacterized Cys-rich domain containing protein, putative, expressed -
8 Sobic.009G174500 receptor-like protein kinase, putative, expressed -
9 Sobic.003G075000 expressed protein -
10 Sobic.001G528200 B3 DNA binding domain containing protein, expressed -
11 Sobic.005G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ANTH domain containing protein, expressed -
12 Sobic.001G169200 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
13 Sobic.009G207100 enoyl-CoA hydratase/isomerase family protein, putative, expressed -
14 Sobic.008G002700 receptor protein kinase CRINKLY4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
15 Sobic.004G331800 alginate regulatory protein AlgP, putative, expressed -
16 Sobic.004G083900 plant protein of unknown function domain containing protein, expressed -
17 Sobic.002G207400 auxin-induced protein 5NG4, putative, expressed -
18 Sobic.002G269300 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@dehydration-responsive element-binding protein, putative, expressed -
19 Sobic.003G291400 dehydrogenase, putative, expressed -
20 Sobic.002G367700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic001G328500 Sobic001G328500 Sobic005G064600 Sobic005G064600 Sobic001G328500--Sobic005G064600 Sobic010G179800 Sobic010G179800 Sobic001G328500--Sobic010G179800 Sobic001G072800 Sobic001G072800 Sobic001G328500--Sobic001G072800 Sobic004G151400 Sobic004G151400 Sobic001G328500--Sobic004G151400 Sobic002G376000 Sobic002G376000 Sobic001G328500--Sobic002G376000 Sobic001G463100 Sobic001G463100 Sobic001G328500--Sobic001G463100 Sobic001G024500 Sobic001G024500 Sobic001G328500--Sobic001G024500 Sobic009G174500 Sobic009G174500 Sobic001G328500--Sobic009G174500 Sobic003G075000 Sobic003G075000 Sobic001G328500--Sobic003G075000 Sobic005G064600--Sobic002G376000 Sobic005G064600--Sobic001G463100 Sobic005G000100 Sobic005G000100 Sobic005G064600--Sobic005G000100 Sobic001G093900 Sobic001G093900 Sobic005G064600--Sobic001G093900 Sobic010G265800 Sobic010G265800 Sobic005G064600--Sobic010G265800 Sobic003G331600 Sobic003G331600 Sobic005G064600--Sobic003G331600 Sobic005G064600--Sobic010G179800 Sobic004G209900 Sobic004G209900 Sobic005G064600--Sobic004G209900 Sobic005G064600--Sobic001G328500 Sobic010G179800--Sobic002G376000 Sobic002G269400 Sobic002G269400 Sobic010G179800--Sobic002G269400 Sobic010G179800--Sobic001G024500 Sobic008G002700 Sobic008G002700 Sobic010G179800--Sobic008G002700 Sobic007G220700 Sobic007G220700 Sobic010G179800--Sobic007G220700 Sobic004G083900 Sobic004G083900 Sobic010G179800--Sobic004G083900 Sobic003G331500 Sobic003G331500 Sobic010G179800--Sobic003G331500 Sobic001G435500 Sobic001G435500 Sobic010G179800--Sobic001G435500 Sobic009G110200 Sobic009G110200 Sobic010G179800--Sobic009G110200 Sobic006G269000 Sobic006G269000 Sobic001G072800--Sobic006G269000 Sobic008G118900 Sobic008G118900 Sobic001G072800--Sobic008G118900 Sobic001G004700 Sobic001G004700 Sobic001G072800--Sobic001G004700 Sobic006G168400 Sobic006G168400 Sobic001G072800--Sobic006G168400 Sobic004G083300 Sobic004G083300 Sobic001G072800--Sobic004G083300 Sobic001G072800--Sobic003G075000 Sobic007G213300 Sobic007G213300 Sobic001G072800--Sobic007G213300 Sobic003G291400 Sobic003G291400 Sobic001G072800--Sobic003G291400 Sobic007G171950 Sobic007G171950 Sobic001G072800--Sobic007G171950 Sobic001G131400 Sobic001G131400 Sobic004G151400--Sobic001G131400 Sobic009G131100 Sobic009G131100 Sobic004G151400--Sobic009G131100 Sobic008G127500 Sobic008G127500 Sobic004G151400--Sobic008G127500 Sobic009G114500 Sobic009G114500 Sobic004G151400--Sobic009G114500 Sobic010G135000 Sobic010G135000 Sobic004G151400--Sobic010G135000 Sobic004G293100 Sobic004G293100 Sobic004G151400--Sobic004G293100 Sobic001G339801 Sobic001G339801 Sobic004G151400--Sobic001G339801 Sobic005G011400 Sobic005G011400 Sobic004G151400--Sobic005G011400 Sobic004G265700 Sobic004G265700 Sobic004G151400--Sobic004G265700 Sobic006G167800 Sobic006G167800 Sobic002G376000--Sobic006G167800 Sobic001G288100 Sobic001G288100 Sobic002G376000--Sobic001G288100 Sobic002G376000--Sobic010G179800 Sobic001G526000 Sobic001G526000 Sobic002G376000--Sobic001G526000 Sobic002G376000--Sobic001G093900 Sobic002G376000--Sobic001G024500 Sobic002G376000--Sobic002G269400 Sobic004G110400 Sobic004G110400 Sobic002G376000--Sobic004G110400 Sobic001G075000 Sobic001G075000 Sobic002G376000--Sobic001G075000 Sobic004G337000 Sobic004G337000 Sobic001G463100--Sobic004G337000 Sobic006G160600 Sobic006G160600 Sobic001G463100--Sobic006G160600 Sobic001G463100--Sobic010G135000 Sobic001G054200 Sobic001G054200 Sobic001G463100--Sobic001G054200 Sobic001G463100--Sobic004G083300 Sobic010G199100 Sobic010G199100 Sobic001G463100--Sobic010G199100 Sobic001G138300 Sobic001G138300 Sobic001G463100--Sobic001G138300 Sobic001G463100--Sobic004G265700 Sobic001G463100--Sobic009G131100 Sobic001G024500--Sobic001G093900 Sobic001G024500--Sobic008G002700 Sobic001G024500--Sobic007G220700 Sobic001G024500--Sobic002G376000 Sobic001G024500--Sobic010G179800 Sobic001G024500--Sobic003G075000 Sobic001G024500--Sobic001G075000 Sobic005G161100 Sobic005G161100 Sobic001G024500--Sobic005G161100 Sobic001G182600 Sobic001G182600 Sobic001G024500--Sobic001G182600 Sobic001G339300 Sobic001G339300 Sobic009G174500--Sobic001G339300 Sobic004G210601 Sobic004G210601 Sobic009G174500--Sobic004G210601 Sobic007G037800 Sobic007G037800 Sobic009G174500--Sobic007G037800 Sobic005G167500 Sobic005G167500 Sobic009G174500--Sobic005G167500 Sobic009G150000 Sobic009G150000 Sobic009G174500--Sobic009G150000 Sobic009G174500--Sobic001G024500 Sobic001G098600 Sobic001G098600 Sobic009G174500--Sobic001G098600 Sobic004G197800 Sobic004G197800 Sobic009G174500--Sobic004G197800 Sobic003G098700 Sobic003G098700 Sobic009G174500--Sobic003G098700 Sobic003G075000--Sobic001G024500 Sobic003G075000--Sobic001G131400 Sobic006G100600 Sobic006G100600 Sobic003G075000--Sobic006G100600 Sobic007G194700 Sobic007G194700 Sobic003G075000--Sobic007G194700 Sobic002G345850 Sobic002G345850 Sobic003G075000--Sobic002G345850 Sobic005G107300 Sobic005G107300 Sobic003G075000--Sobic005G107300 Sobic001G087900 Sobic001G087900 Sobic003G075000--Sobic001G087900 Sobic003G075000--Sobic001G072800 Sobic002G066400 Sobic002G066400 Sobic003G075000--Sobic002G066400
Octagon: transcription factors


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