Gene annotation
Transcriptome id Sobic.001G342300.2,Sobic.001G342300.4,Sobic.001G342300.3
Synonym Sb01g032875
Functional annotation Translation elongation factor EF1B( (PubMedID : 26759170,(PubMedID : 24597475)
elongation factor protein, putative, expressed
UniProt A0A1Z5S9K9 , C5WWP8
Pfam PF00736
Panther DB PTHR11595 PTHR11595:SF27
NCBI CDD KOG1668; Elongation factor 1 beta/delta chain
KEGG Orthology K03232; elongation factor 1-beta
Gene Ontology GO:0006414; translational elongation GO:0005853eukaryotic translation elongation factor 1 complex GO:0003746translation elongation factor activity


Orthologs (automatic annotation)
TAIR AT2G18110 : Translation elongation factor EF1B/ribosomal protein S6 family protein
RAP-DB (Rice) LOC_Os03g29260.2 : elongation factor protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK21332 , KQK21331
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G002800 fatty acid desaturase, putative, expressed K10257: FAD3, FAD7, FAD8, acyl-lipid omega-3 desaturase
2 Sobic.002G391800 peroxidase, putative, expressed K00430: peroxidase
3 Sobic.001G232700 - -
4 Sobic.003G206400 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
5 Sobic.003G317900 lysM domain containing protein, putative -
6 Sobic.002G377600 patatin, putative, expressed -
7 Sobic.002G063600 disease resistance protein RPM1, putative -
8 Sobic.005G038100 sialyltransferase family domain containing protein, expressed -
9 Sobic.004G159500 AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.010G087900 similar to Aquaporin PIP1-6(PubMedID : 29862293)@-(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
11 Sobic.003G143000 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
12 Sobic.003G430500 OsCML23 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
13 Sobic.010G045500 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
14 Sobic.001G342400 SPX domain-3("PubMedID : 26759170,PubMedID : 24597475")@SPX domain-containing protein, putative, expressed -
15 Sobic.001G242100 expressed protein -
16 Sobic.006G234466 - -
17 Sobic.003G337600 WRKY116, expressed -
18 Sobic.001G234900 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
19 Sobic.005G222500 phospholipase D, putative, expressed K01115: phospholipase D1/2
20 Sobic.005G160700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -


Gene co-expression network
sample Sobic001G342300 Sobic001G342300 Sobic008G002800 Sobic008G002800 Sobic001G342300--Sobic008G002800 Sobic002G391800 Sobic002G391800 Sobic001G342300--Sobic002G391800 Sobic001G232700 Sobic001G232700 Sobic001G342300--Sobic001G232700 Sobic003G206400 Sobic003G206400 Sobic001G342300--Sobic003G206400 Sobic003G317900 Sobic003G317900 Sobic001G342300--Sobic003G317900 Sobic002G377600 Sobic002G377600 Sobic001G342300--Sobic002G377600 Sobic002G063600 Sobic002G063600 Sobic001G342300--Sobic002G063600 Sobic005G038100 Sobic005G038100 Sobic001G342300--Sobic005G038100 Sobic004G159500 Sobic004G159500 Sobic001G342300--Sobic004G159500 Sobic010G045500 Sobic010G045500 Sobic008G002800--Sobic010G045500 Sobic001G242100 Sobic001G242100 Sobic008G002800--Sobic001G242100 Sobic008G002800--Sobic001G232700 Sobic002G301900 Sobic002G301900 Sobic008G002800--Sobic002G301900 Sobic006G234466 Sobic006G234466 Sobic008G002800--Sobic006G234466 Sobic005G222500 Sobic005G222500 Sobic008G002800--Sobic005G222500 Sobic008G002800--Sobic002G391800 Sobic004G180700 Sobic004G180700 Sobic008G002800--Sobic004G180700 Sobic004G301600 Sobic004G301600 Sobic008G002800--Sobic004G301600 Sobic001G234900 Sobic001G234900 Sobic002G391800--Sobic001G234900 Sobic005G160700 Sobic005G160700 Sobic002G391800--Sobic005G160700 Sobic001G342400 Sobic001G342400 Sobic002G391800--Sobic001G342400 Sobic002G391800--Sobic001G242100 Sobic001G379400 Sobic001G379400 Sobic002G391800--Sobic001G379400 Sobic002G391800--Sobic001G232700 Sobic002G391800--Sobic002G377600 Sobic002G391800--Sobic005G222500 Sobic002G391800--Sobic010G045500 Sobic001G232700--Sobic001G242100 Sobic001G232700--Sobic002G391800 Sobic001G232700--Sobic005G222500 Sobic001G232700--Sobic003G206400 Sobic010G128400 Sobic010G128400 Sobic001G232700--Sobic010G128400 Sobic009G065800 Sobic009G065800 Sobic001G232700--Sobic009G065800 Sobic001G232700--Sobic002G301900 Sobic001G232700--Sobic002G063600 Sobic001G232700--Sobic010G045500 Sobic003G206400--Sobic002G063600 Sobic010G087900 Sobic010G087900 Sobic003G206400--Sobic010G087900 Sobic002G118801 Sobic002G118801 Sobic003G206400--Sobic002G118801 Sobic001G539200 Sobic001G539200 Sobic003G206400--Sobic001G539200 Sobic006G018100 Sobic006G018100 Sobic003G206400--Sobic006G018100 Sobic008G020000 Sobic008G020000 Sobic003G206400--Sobic008G020000 Sobic003G206400--Sobic001G232700 Sobic003G206400--Sobic009G065800 Sobic003G206400--Sobic003G317900 Sobic003G317900--Sobic010G087900 Sobic003G317900--Sobic001G539200 Sobic003G317900--Sobic003G206400 Sobic003G317900--Sobic002G063600 Sobic003G317900--Sobic002G377600 Sobic003G317900--Sobic001G232700 Sobic010G147200 Sobic010G147200 Sobic003G317900--Sobic010G147200 Sobic003G317900--Sobic002G118801 Sobic006G048100 Sobic006G048100 Sobic003G317900--Sobic006G048100 Sobic002G377600--Sobic002G063600 Sobic006G277700 Sobic006G277700 Sobic002G377600--Sobic006G277700 Sobic002G377600--Sobic003G206400 Sobic002G377600--Sobic002G391800 Sobic006G079300 Sobic006G079300 Sobic002G377600--Sobic006G079300 Sobic002G377600--Sobic010G087900 Sobic005G066432 Sobic005G066432 Sobic002G377600--Sobic005G066432 Sobic002G377600--Sobic005G160700 Sobic002G377600--Sobic001G379400 Sobic002G063600--Sobic003G206400 Sobic002G063600--Sobic002G118801 Sobic002G063600--Sobic002G377600 Sobic002G063600--Sobic001G539200 Sobic002G063600--Sobic006G079300 Sobic002G063600--Sobic010G087900 Sobic002G063600--Sobic010G128400 Sobic010G031700 Sobic010G031700 Sobic002G063600--Sobic010G031700 Sobic002G063600--Sobic006G277700 Sobic005G038100--Sobic003G206400 Sobic005G038100--Sobic001G232700 Sobic005G038100--Sobic002G391800 Sobic005G038100--Sobic002G063600 Sobic005G038100--Sobic002G377600 Sobic005G038100--Sobic010G128400 Sobic005G038100--Sobic006G018100 Sobic005G038100--Sobic010G087900 Sobic005G038100--Sobic003G317900 Sobic010G053200 Sobic010G053200 Sobic004G159500--Sobic010G053200 Sobic001G414300 Sobic001G414300 Sobic004G159500--Sobic001G414300 Sobic008G184700 Sobic008G184700 Sobic004G159500--Sobic008G184700 Sobic003G143000 Sobic003G143000 Sobic004G159500--Sobic003G143000 Sobic004G159500--Sobic002G391800 Sobic004G159500--Sobic001G232700 Sobic007G054900 Sobic007G054900 Sobic004G159500--Sobic007G054900 Sobic001G539300 Sobic001G539300 Sobic004G159500--Sobic001G539300
Octagon: transcription factors


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