Gene annotation
Transcriptome id Sobic.001G360000.1
Synonym PDK, Sb01g034390, ATPDHK
Functional annotation pyruvate dehydrogenase kinase (PubMedID : 27016024)
kinase, putative, expressed
UniProt C5WYQ1
Pfam PF02518 PF10436
Panther DB PTHR11947 PTHR11947:SF24
NCBI CDD KOG0787; Dehydrogenase kinase
KEGG Orthology K00898; pyruvate dehydrogenase kinase 2/3/4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06483 : pyruvate dehydrogenase kinase
RAP-DB (Rice) LOC_Os03g25400.1 : kinase, putative, expressed
MaizeGDB (Corn) Zm00025a002628 , Zm00025a048916 , Zm00025a052309
Brachypodium KQK15010 , KQK21554 , KQK21552 , KQK21553
Barley HORVU2Hr1G027040.3 , HORVU2Hr1G027040.2 , HORVU2Hr1G027040.1 , HORVU2Hr1G027040.5 , HORVU2Hr1G027040.4
Wheat TraesCS4B02G177700 , TraesCS4D02G179300 , TraesCS4D02G179300 , TraesCS2B02G175300
Populus PNT13951 , PNT13949


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cDNA sequences
Sobic.001G360000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
2 Sobic.003G019100 KIN, antigenic determinant of recA protein, putative, expressed K13102: DNA/RNA-binding protein KIN17
3 Sobic.010G248800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticulon domain containing protein, putative, expressed -
4 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
5 Sobic.008G175900 expressed protein -
6 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
7 Sobic.003G102500 expressed protein -
8 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
9 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
10 Sobic.006G124900 MA3 domain containing protein, expressed -
11 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
12 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
14 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
15 Sobic.009G121100 expressed protein -
16 Sobic.001G524200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
17 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
18 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
19 Sobic.008G153000 MATH domain containing protein, expressed -
20 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2


Gene co-expression network
sample Sobic001G360000 Sobic001G360000 Sobic002G300400 Sobic002G300400 Sobic001G360000--Sobic002G300400 Sobic003G019100 Sobic003G019100 Sobic001G360000--Sobic003G019100 Sobic010G248800 Sobic010G248800 Sobic001G360000--Sobic010G248800 Sobic001G514000 Sobic001G514000 Sobic001G360000--Sobic001G514000 Sobic008G175900 Sobic008G175900 Sobic001G360000--Sobic008G175900 Sobic004G021100 Sobic004G021100 Sobic001G360000--Sobic004G021100 Sobic003G102500 Sobic003G102500 Sobic001G360000--Sobic003G102500 Sobic007G130600 Sobic007G130600 Sobic001G360000--Sobic007G130600 Sobic005G045300 Sobic005G045300 Sobic001G360000--Sobic005G045300 Sobic010G001600 Sobic010G001600 Sobic002G300400--Sobic010G001600 Sobic006G124900 Sobic006G124900 Sobic002G300400--Sobic006G124900 Sobic001G543800 Sobic001G543800 Sobic002G300400--Sobic001G543800 Sobic010G264100 Sobic010G264100 Sobic002G300400--Sobic010G264100 Sobic008G160700 Sobic008G160700 Sobic002G300400--Sobic008G160700 Sobic002G165300 Sobic002G165300 Sobic002G300400--Sobic002G165300 Sobic005G177800 Sobic005G177800 Sobic002G300400--Sobic005G177800 Sobic002G300400--Sobic007G130600 Sobic001G194900 Sobic001G194900 Sobic002G300400--Sobic001G194900 Sobic009G121100 Sobic009G121100 Sobic003G019100--Sobic009G121100 Sobic001G373200 Sobic001G373200 Sobic003G019100--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic003G019100--Sobic003G407300 Sobic004G295800 Sobic004G295800 Sobic003G019100--Sobic004G295800 Sobic003G019100--Sobic004G021100 Sobic006G214500 Sobic006G214500 Sobic003G019100--Sobic006G214500 Sobic009G249200 Sobic009G249200 Sobic003G019100--Sobic009G249200 Sobic001G290000 Sobic001G290000 Sobic003G019100--Sobic001G290000 Sobic001G409600 Sobic001G409600 Sobic003G019100--Sobic001G409600 Sobic001G156100 Sobic001G156100 Sobic010G248800--Sobic001G156100 Sobic001G447500 Sobic001G447500 Sobic010G248800--Sobic001G447500 Sobic010G248800--Sobic003G407300 Sobic010G248800--Sobic001G373200 Sobic010G248800--Sobic003G019100 Sobic006G058600 Sobic006G058600 Sobic010G248800--Sobic006G058600 Sobic001G322700 Sobic001G322700 Sobic010G248800--Sobic001G322700 Sobic002G304000 Sobic002G304000 Sobic010G248800--Sobic002G304000 Sobic003G329400 Sobic003G329400 Sobic010G248800--Sobic003G329400 Sobic002G157300 Sobic002G157300 Sobic001G514000--Sobic002G157300 Sobic004G345700 Sobic004G345700 Sobic001G514000--Sobic004G345700 Sobic006G173100 Sobic006G173100 Sobic001G514000--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic001G514000--Sobic003G008500 Sobic002G197100 Sobic002G197100 Sobic001G514000--Sobic002G197100 Sobic003G401000 Sobic003G401000 Sobic001G514000--Sobic003G401000 Sobic007G137900 Sobic007G137900 Sobic001G514000--Sobic007G137900 Sobic006G128800 Sobic006G128800 Sobic001G514000--Sobic006G128800 Sobic004G007300 Sobic004G007300 Sobic001G514000--Sobic004G007300 Sobic003G182800 Sobic003G182800 Sobic008G175900--Sobic003G182800 Sobic001G085500 Sobic001G085500 Sobic008G175900--Sobic001G085500 Sobic001G524200 Sobic001G524200 Sobic008G175900--Sobic001G524200 Sobic004G203100 Sobic004G203100 Sobic008G175900--Sobic004G203100 Sobic010G078100 Sobic010G078100 Sobic008G175900--Sobic010G078100 Sobic008G175900--Sobic004G295800 Sobic002G333500 Sobic002G333500 Sobic008G175900--Sobic002G333500 Sobic008G175900--Sobic004G007300 Sobic010G058900 Sobic010G058900 Sobic008G175900--Sobic010G058900 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic001G512700 Sobic001G512700 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G205600 Sobic004G205600 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic001G405300 Sobic001G405300 Sobic003G102500--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic003G102500--Sobic006G046700 Sobic007G095200 Sobic007G095200 Sobic003G102500--Sobic007G095200 Sobic007G026000 Sobic007G026000 Sobic003G102500--Sobic007G026000 Sobic007G227000 Sobic007G227000 Sobic003G102500--Sobic007G227000 Sobic006G211500 Sobic006G211500 Sobic003G102500--Sobic006G211500 Sobic005G059100 Sobic005G059100 Sobic003G102500--Sobic005G059100 Sobic007G043500 Sobic007G043500 Sobic003G102500--Sobic007G043500 Sobic003G147000 Sobic003G147000 Sobic003G102500--Sobic003G147000 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic005G045300--Sobic001G512700 Sobic003G408500 Sobic003G408500 Sobic005G045300--Sobic003G408500 Sobic010G129200 Sobic010G129200 Sobic005G045300--Sobic010G129200 Sobic003G445400 Sobic003G445400 Sobic005G045300--Sobic003G445400 Sobic009G166300 Sobic009G166300 Sobic005G045300--Sobic009G166300 Sobic004G031700 Sobic004G031700 Sobic005G045300--Sobic004G031700 Sobic006G128900 Sobic006G128900 Sobic005G045300--Sobic006G128900 Sobic002G006900 Sobic002G006900 Sobic005G045300--Sobic002G006900 Sobic008G024600 Sobic008G024600 Sobic005G045300--Sobic008G024600
Octagon: transcription factors


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