Gene annotation
Transcriptome id Sobic.010G248800.1
Synonym Sb10g028710
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
reticulon domain containing protein, putative, expressed
UniProt C5Z8U8
Pfam PF02453
Panther DB PTHR10994 PTHR10994:SF61
NCBI CDD KOG1792; Reticulon
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20590 : Reticulon family protein
RAP-DB (Rice) LOC_Os02g19990.2 : reticulon domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034302
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
2 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
3 Sobic.003G407300 histidine kinase, putative, expressed K14489: arabidopsis histidine kinase 2/3/4 (cytokinin receptor)
4 Sobic.001G373200 lipase precursor, putative, expressed -
5 Sobic.003G019100 KIN, antigenic determinant of recA protein, putative, expressed K13102: DNA/RNA-binding protein KIN17
6 Sobic.006G058600 AML1, putative, expressed -
7 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
8 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
9 Sobic.003G329400 dihydropyrimidinase, putative, expressed K01464: DPYS, dht, dihydropyrimidinase
10 Sobic.009G121100 expressed protein -
11 Sobic.008G021800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NAC domain transcription factor, putative, expressed -
12 Sobic.004G242500 glycosyl hydrolase family 47 domain contain protein, expressed K10084: ER degradation enhancer, mannosidase alpha-like 1
13 Sobic.003G241000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CTP synthase, putative, expressed K01937: pyrG, CTP synthase
14 Sobic.003G148800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K09699: DBT, 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)
15 Sobic.005G169400 WIP5 - Wound-induced protein precursor, expressed -
16 Sobic.001G224600 peroxisome assembly protein 12, putative, expressed K13345: PEX12, peroxin-12
17 Sobic.009G229800 Uncharacterized gene family(PubMedID : 29126242)@"Causal gene for dw1, a putative membrane protein of unknown function"(PubMedID : 26963094)@expressed protein -
18 Sobic.005G024700 major facilitator superfamily antiporter, putative, expressed -
19 Sobic.004G295800 chaperone protein dnaJ, putative, expressed K09503: DnaJ homolog subfamily A member 2
20 Sobic.001G360000 pyruvate dehydrogenase kinase(PubMedID : 27016024)@kinase, putative, expressed K00898: pyruvate dehydrogenase kinase 2/3/4


Gene co-expression network
sample Sobic010G248800 Sobic010G248800 Sobic001G156100 Sobic001G156100 Sobic010G248800--Sobic001G156100 Sobic001G447500 Sobic001G447500 Sobic010G248800--Sobic001G447500 Sobic003G407300 Sobic003G407300 Sobic010G248800--Sobic003G407300 Sobic001G373200 Sobic001G373200 Sobic010G248800--Sobic001G373200 Sobic003G019100 Sobic003G019100 Sobic010G248800--Sobic003G019100 Sobic006G058600 Sobic006G058600 Sobic010G248800--Sobic006G058600 Sobic001G322700 Sobic001G322700 Sobic010G248800--Sobic001G322700 Sobic002G304000 Sobic002G304000 Sobic010G248800--Sobic002G304000 Sobic003G329400 Sobic003G329400 Sobic010G248800--Sobic003G329400 Sobic009G121100 Sobic009G121100 Sobic001G156100--Sobic009G121100 Sobic001G156100--Sobic001G447500 Sobic006G214500 Sobic006G214500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic008G160700 Sobic008G160700 Sobic001G156100--Sobic008G160700 Sobic009G027000 Sobic009G027000 Sobic001G156100--Sobic009G027000 Sobic001G156100--Sobic001G373200 Sobic004G295800 Sobic004G295800 Sobic001G156100--Sobic004G295800 Sobic001G447500--Sobic001G156100 Sobic001G447500--Sobic006G214500 Sobic001G447500--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic001G447500--Sobic003G148800 Sobic008G062200 Sobic008G062200 Sobic001G447500--Sobic008G062200 Sobic007G219900 Sobic007G219900 Sobic001G447500--Sobic007G219900 Sobic001G447500--Sobic003G407300 Sobic001G447500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic001G447500--Sobic001G443900 Sobic003G407300--Sobic009G121100 Sobic003G407300--Sobic001G373200 Sobic003G407300--Sobic003G019100 Sobic003G407300--Sobic006G214500 Sobic001G507300 Sobic001G507300 Sobic003G407300--Sobic001G507300 Sobic003G407300--Sobic004G295800 Sobic003G407300--Sobic009G229800 Sobic002G303000 Sobic002G303000 Sobic003G407300--Sobic002G303000 Sobic007G024700 Sobic007G024700 Sobic003G407300--Sobic007G024700 Sobic001G373200--Sobic003G407300 Sobic001G373200--Sobic009G121100 Sobic001G373200--Sobic003G019100 Sobic001G373200--Sobic004G295800 Sobic001G373200--Sobic007G024700 Sobic001G373200--Sobic006G214500 Sobic002G179900 Sobic002G179900 Sobic001G373200--Sobic002G179900 Sobic001G373200--Sobic001G156100 Sobic009G249200 Sobic009G249200 Sobic001G373200--Sobic009G249200 Sobic003G019100--Sobic009G121100 Sobic003G019100--Sobic001G373200 Sobic003G019100--Sobic003G407300 Sobic003G019100--Sobic004G295800 Sobic004G021100 Sobic004G021100 Sobic003G019100--Sobic004G021100 Sobic003G019100--Sobic006G214500 Sobic003G019100--Sobic009G249200 Sobic001G290000 Sobic001G290000 Sobic003G019100--Sobic001G290000 Sobic001G409600 Sobic001G409600 Sobic003G019100--Sobic001G409600 Sobic006G058600--Sobic009G229800 Sobic004G330900 Sobic004G330900 Sobic006G058600--Sobic004G330900 Sobic003G401200 Sobic003G401200 Sobic006G058600--Sobic003G401200 Sobic006G058600--Sobic001G447500 Sobic006G058600--Sobic003G329400 Sobic006G058600--Sobic001G443900 Sobic002G215700 Sobic002G215700 Sobic006G058600--Sobic002G215700 Sobic001G427100 Sobic001G427100 Sobic006G058600--Sobic001G427100 Sobic006G058600--Sobic003G148800 Sobic001G322700--Sobic003G329400 Sobic001G325200 Sobic001G325200 Sobic001G322700--Sobic001G325200 Sobic007G068100 Sobic007G068100 Sobic001G322700--Sobic007G068100 Sobic009G057300 Sobic009G057300 Sobic001G322700--Sobic009G057300 Sobic004G101900 Sobic004G101900 Sobic001G322700--Sobic004G101900 Sobic010G107000 Sobic010G107000 Sobic001G322700--Sobic010G107000 Sobic003G149200 Sobic003G149200 Sobic001G322700--Sobic003G149200 Sobic001G015500 Sobic001G015500 Sobic001G322700--Sobic001G015500 Sobic001G322700--Sobic002G304000 Sobic009G226300 Sobic009G226300 Sobic002G304000--Sobic009G226300 Sobic009G054500 Sobic009G054500 Sobic002G304000--Sobic009G054500 Sobic002G304000--Sobic004G101900 Sobic002G304000--Sobic003G148800 Sobic002G304000--Sobic002G215700 Sobic002G304000--Sobic008G062200 Sobic002G304000--Sobic001G325200 Sobic003G355600 Sobic003G355600 Sobic002G304000--Sobic003G355600 Sobic003G105800 Sobic003G105800 Sobic002G304000--Sobic003G105800 Sobic003G329400--Sobic001G322700 Sobic003G329400--Sobic008G062200 Sobic003G329400--Sobic001G325200 Sobic003G329400--Sobic010G107000 Sobic003G329400--Sobic002G304000 Sobic003G329400--Sobic007G068100 Sobic003G329400--Sobic009G226300 Sobic003G329400--Sobic003G148800 Sobic003G354400 Sobic003G354400 Sobic003G329400--Sobic003G354400
Octagon: transcription factors


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