Gene annotation
Transcriptome id Sobic.001G524200.1
Synonym Sb01g048820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
serine/threonine-protein kinase, putative, expressed
UniProt C5X017
Pfam PF07714
Panther DB PTHR27001 PTHR27001:SF156
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G01540 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os03g03410.1 : serine/threonine-protein kinase, putative, expressed
MaizeGDB (Corn) Zm00025a053493 , Zm00025a000341
Brachypodium PNT67767 , KQK23896
Barley -
Wheat TraesCS4B02G318400 , TraesCS4B02G318400 , TraesCS5A02G493800 , TraesCS5A02G493800 , TraesCS4D02G314800
Populus -


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cDNA sequences
Sobic.001G524200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
2 Sobic.010G217400 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
3 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
4 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
5 Sobic.005G007800 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
6 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
7 Sobic.006G114500 per1-like family protein, putative, expressed -
8 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
9 Sobic.009G121100 expressed protein -
10 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
11 Sobic.004G330900 Positive cytokinine regulator(PubMedID : 30367619)@two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
12 Sobic.010G188400 copine-1, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
13 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
14 Sobic.001G168400 similar to Serine/threonine-protein kinase SAPK10(PubMedID : 29862293)@CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
15 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
16 Sobic.006G028200 glycine-rich protein, putative, expressed -
17 Sobic.003G305200 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed K01126: E3.1.4.46, glpQ, glycerophosphoryl diester phosphodiesterase
18 Sobic.010G189000 protein with a conserved N-terminal region, putative, expressed -
19 Sobic.004G196700 expressed protein -
20 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic001G524200 Sobic001G524200 Sobic004G027100 Sobic004G027100 Sobic001G524200--Sobic004G027100 Sobic010G217400 Sobic010G217400 Sobic001G524200--Sobic010G217400 Sobic007G130600 Sobic007G130600 Sobic001G524200--Sobic007G130600 Sobic003G145900 Sobic003G145900 Sobic001G524200--Sobic003G145900 Sobic005G007800 Sobic005G007800 Sobic001G524200--Sobic005G007800 Sobic010G078100 Sobic010G078100 Sobic001G524200--Sobic010G078100 Sobic006G114500 Sobic006G114500 Sobic001G524200--Sobic006G114500 Sobic002G303000 Sobic002G303000 Sobic001G524200--Sobic002G303000 Sobic009G121100 Sobic009G121100 Sobic001G524200--Sobic009G121100 Sobic004G061900 Sobic004G061900 Sobic004G027100--Sobic004G061900 Sobic004G088400 Sobic004G088400 Sobic004G027100--Sobic004G088400 Sobic010G260500 Sobic010G260500 Sobic004G027100--Sobic010G260500 Sobic001G235000 Sobic001G235000 Sobic004G027100--Sobic001G235000 Sobic002G157300 Sobic002G157300 Sobic004G027100--Sobic002G157300 Sobic002G177400 Sobic002G177400 Sobic004G027100--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G027100--Sobic007G008800 Sobic009G040700 Sobic009G040700 Sobic004G027100--Sobic009G040700 Sobic008G117200 Sobic008G117200 Sobic004G027100--Sobic008G117200 Sobic010G217400--Sobic001G524200 Sobic006G028200 Sobic006G028200 Sobic010G217400--Sobic006G028200 Sobic002G161000 Sobic002G161000 Sobic010G217400--Sobic002G161000 Sobic004G325400 Sobic004G325400 Sobic010G217400--Sobic004G325400 Sobic010G189000 Sobic010G189000 Sobic010G217400--Sobic010G189000 Sobic001G252700 Sobic001G252700 Sobic010G217400--Sobic001G252700 Sobic006G046700 Sobic006G046700 Sobic010G217400--Sobic006G046700 Sobic010G217400--Sobic007G130600 Sobic003G401000 Sobic003G401000 Sobic010G217400--Sobic003G401000 Sobic001G194900 Sobic001G194900 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic007G130600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic007G130600--Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic010G001600 Sobic010G001600 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic009G235900 Sobic009G235900 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic003G145900--Sobic006G114500 Sobic004G037900 Sobic004G037900 Sobic003G145900--Sobic004G037900 Sobic005G007800--Sobic009G235900 Sobic005G007800--Sobic010G042900 Sobic005G007800--Sobic002G303000 Sobic005G007800--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic005G007800--Sobic001G359400 Sobic005G007800--Sobic009G040700 Sobic004G143700 Sobic004G143700 Sobic005G007800--Sobic004G143700 Sobic005G007800--Sobic010G078100 Sobic001G424700 Sobic001G424700 Sobic005G007800--Sobic001G424700 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic010G078100--Sobic009G121100 Sobic006G214500 Sobic006G214500 Sobic010G078100--Sobic006G214500 Sobic010G078100--Sobic009G027000 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic001G142100 Sobic001G142100 Sobic006G114500--Sobic001G142100 Sobic002G313500 Sobic002G313500 Sobic006G114500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic006G114500--Sobic004G350100 Sobic004G021100 Sobic004G021100 Sobic006G114500--Sobic004G021100 Sobic004G339100 Sobic004G339100 Sobic006G114500--Sobic004G339100 Sobic004G205600 Sobic004G205600 Sobic006G114500--Sobic004G205600 Sobic001G201400 Sobic001G201400 Sobic006G114500--Sobic001G201400 Sobic001G466700 Sobic001G466700 Sobic006G114500--Sobic001G466700 Sobic009G257800 Sobic009G257800 Sobic006G114500--Sobic009G257800 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic003G407300 Sobic003G407300 Sobic002G303000--Sobic003G407300 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic004G196700 Sobic004G196700 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic008G024600 Sobic008G024600 Sobic002G303000--Sobic008G024600 Sobic009G121100--Sobic006G214500 Sobic009G121100--Sobic003G407300 Sobic003G019100 Sobic003G019100 Sobic009G121100--Sobic003G019100 Sobic001G156100 Sobic001G156100 Sobic009G121100--Sobic001G156100 Sobic001G443900 Sobic001G443900 Sobic009G121100--Sobic001G443900 Sobic001G373200 Sobic001G373200 Sobic009G121100--Sobic001G373200 Sobic009G121100--Sobic010G078100 Sobic009G121100--Sobic004G295800 Sobic009G121100--Sobic002G303000
Octagon: transcription factors


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