Gene annotation
Transcriptome id Sobic.003G102500.2
Synonym
Functional annotation expressed protein
UniProt C5XEY9
Pfam PF12014
Panther DB PTHR33917 PTHR33917:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G27510 : Protein of unknown function (DUF3506)
RAP-DB (Rice) LOC_Os01g01790.1 : expressed protein
MaizeGDB (Corn) Zm00025a022469 , Zm00025a023805 , Zm00025a035419 , Zm00025a026533
Brachypodium KQK02303 , KQK02304
Barley HORVU3Hr1G000230.2 , HORVU3Hr1G000230.3 , HORVU3Hr1G000230.1 , HORVU3Hr1G000230.6 , HORVU3Hr1G000230.7 , HORVU3Hr1G000230.4 , HORVU3Hr1G000230.5 , HORVU3Hr1G000230.8 , HORVU3Hr1G000230.9
Wheat TraesCS3D02G009800 , TraesCS3B02G000200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G405300 6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed -
2 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
3 Sobic.007G095200 ATPase, AFG1 family domain containing protein, expressed K18798: AFG1, peroxisome-assembly ATPase
4 Sobic.007G026000 ATBET9, putative, expressed -
5 Sobic.007G227000 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
6 Sobic.006G211500 "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed K04121: ent-kaurene synthase
7 Sobic.005G059100 bromodomain domain containing protein, expressed -
8 Sobic.007G043500 DNA topoisomerase 1, putative, expressed K03163: DNA topoisomerase I
9 Sobic.003G147000 phospholipase D p1, putative, expressed K01115: phospholipase D1/2
10 Sobic.008G153000 MATH domain containing protein, expressed -
11 Sobic.001G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CSLA2 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
12 Sobic.002G159200 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
13 Sobic.010G040800 RNA recognition motif containing protein, putative, expressed -
14 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
15 Sobic.004G031700 expressed protein -
16 Sobic.001G379200 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
17 Sobic.008G078100 EDM2, putative, expressed -
18 Sobic.004G333700 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
19 Sobic.001G524200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
20 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -


Gene co-expression network
sample Sobic003G102500 Sobic003G102500 Sobic001G405300 Sobic001G405300 Sobic003G102500--Sobic001G405300 Sobic006G046700 Sobic006G046700 Sobic003G102500--Sobic006G046700 Sobic007G095200 Sobic007G095200 Sobic003G102500--Sobic007G095200 Sobic007G026000 Sobic007G026000 Sobic003G102500--Sobic007G026000 Sobic007G227000 Sobic007G227000 Sobic003G102500--Sobic007G227000 Sobic006G211500 Sobic006G211500 Sobic003G102500--Sobic006G211500 Sobic005G059100 Sobic005G059100 Sobic003G102500--Sobic005G059100 Sobic007G043500 Sobic007G043500 Sobic003G102500--Sobic007G043500 Sobic003G147000 Sobic003G147000 Sobic003G102500--Sobic003G147000 Sobic001G405300--Sobic006G046700 Sobic001G405300--Sobic007G026000 Sobic002G159200 Sobic002G159200 Sobic001G405300--Sobic002G159200 Sobic006G161000 Sobic006G161000 Sobic001G405300--Sobic006G161000 Sobic001G405300--Sobic005G059100 Sobic001G405300--Sobic007G043500 Sobic006G013500 Sobic006G013500 Sobic001G405300--Sobic006G013500 Sobic006G186400 Sobic006G186400 Sobic001G405300--Sobic006G186400 Sobic004G031700 Sobic004G031700 Sobic001G405300--Sobic004G031700 Sobic008G153000 Sobic008G153000 Sobic006G046700--Sobic008G153000 Sobic006G046700--Sobic004G031700 Sobic006G046700--Sobic007G026000 Sobic001G206100 Sobic001G206100 Sobic006G046700--Sobic001G206100 Sobic001G306900 Sobic001G306900 Sobic006G046700--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic006G046700--Sobic003G445400 Sobic001G425000 Sobic001G425000 Sobic006G046700--Sobic001G425000 Sobic006G046700--Sobic001G405300 Sobic006G046700--Sobic006G013500 Sobic007G095200--Sobic006G046700 Sobic003G336800 Sobic003G336800 Sobic007G095200--Sobic003G336800 Sobic007G185900 Sobic007G185900 Sobic007G095200--Sobic007G185900 Sobic007G095200--Sobic001G405300 Sobic006G028200 Sobic006G028200 Sobic007G095200--Sobic006G028200 Sobic007G095200--Sobic005G059100 Sobic001G296500 Sobic001G296500 Sobic007G095200--Sobic001G296500 Sobic004G012000 Sobic004G012000 Sobic007G095200--Sobic004G012000 Sobic007G095200--Sobic007G026000 Sobic007G026000--Sobic008G153000 Sobic007G026000--Sobic006G046700 Sobic007G026000--Sobic005G059100 Sobic007G026000--Sobic003G445400 Sobic009G119000 Sobic009G119000 Sobic007G026000--Sobic009G119000 Sobic002G153700 Sobic002G153700 Sobic007G026000--Sobic002G153700 Sobic007G026000--Sobic001G206100 Sobic007G026000--Sobic006G013500 Sobic007G026000--Sobic004G031700 Sobic002G320500 Sobic002G320500 Sobic007G227000--Sobic002G320500 Sobic009G178800 Sobic009G178800 Sobic007G227000--Sobic009G178800 Sobic001G303675 Sobic001G303675 Sobic007G227000--Sobic001G303675 Sobic007G227000--Sobic006G046700 Sobic005G015900 Sobic005G015900 Sobic007G227000--Sobic005G015900 Sobic007G227000--Sobic001G206100 Sobic006G080300 Sobic006G080300 Sobic007G227000--Sobic006G080300 Sobic006G032400 Sobic006G032400 Sobic007G227000--Sobic006G032400 Sobic001G477800 Sobic001G477800 Sobic007G227000--Sobic001G477800 Sobic010G189000 Sobic010G189000 Sobic006G211500--Sobic010G189000 Sobic007G208600 Sobic007G208600 Sobic006G211500--Sobic007G208600 Sobic006G211500--Sobic006G046700 Sobic001G252700 Sobic001G252700 Sobic006G211500--Sobic001G252700 Sobic005G225400 Sobic005G225400 Sobic006G211500--Sobic005G225400 Sobic002G288000 Sobic002G288000 Sobic006G211500--Sobic002G288000 Sobic004G246100 Sobic004G246100 Sobic006G211500--Sobic004G246100 Sobic006G211500--Sobic008G153000 Sobic006G211500--Sobic007G095200 Sobic005G059100--Sobic007G043500 Sobic005G059100--Sobic007G026000 Sobic006G123900 Sobic006G123900 Sobic005G059100--Sobic006G123900 Sobic002G067800 Sobic002G067800 Sobic005G059100--Sobic002G067800 Sobic010G194700 Sobic010G194700 Sobic005G059100--Sobic010G194700 Sobic005G059100--Sobic006G080300 Sobic005G059100--Sobic007G185900 Sobic005G059100--Sobic001G206100 Sobic005G059100--Sobic002G159200 Sobic007G043500--Sobic005G059100 Sobic007G043500--Sobic002G159200 Sobic007G043500--Sobic006G123900 Sobic007G043500--Sobic002G067800 Sobic007G043500--Sobic010G194700 Sobic007G043500--Sobic001G405300 Sobic008G073000 Sobic008G073000 Sobic007G043500--Sobic008G073000 Sobic007G043500--Sobic006G080300 Sobic008G106000 Sobic008G106000 Sobic007G043500--Sobic008G106000 Sobic001G065000 Sobic001G065000 Sobic003G147000--Sobic001G065000 Sobic005G118600 Sobic005G118600 Sobic003G147000--Sobic005G118600 Sobic003G147000--Sobic008G153000 Sobic006G035300 Sobic006G035300 Sobic003G147000--Sobic006G035300 Sobic007G218000 Sobic007G218000 Sobic003G147000--Sobic007G218000 Sobic006G037700 Sobic006G037700 Sobic003G147000--Sobic006G037700 Sobic009G249700 Sobic009G249700 Sobic003G147000--Sobic009G249700 Sobic003G259100 Sobic003G259100 Sobic003G147000--Sobic003G259100 Sobic002G112700 Sobic002G112700 Sobic003G147000--Sobic002G112700
Octagon: transcription factors


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