Gene annotation
Transcriptome id Sobic.001G399900.1
Synonym ATSEB1, Sb01g037850, SEB1, COBL7
Functional annotation COBRA-like protein 7 precursor, putative, expressed
UniProt C5WML2
Pfam PF04833
Panther DB PTHR31052 PTHR31052:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT4G16120 : COBRA-like protein-7 precursor
RAP-DB (Rice) LOC_Os03g18910.1 : COBRA-like protein 7 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015499 , Zm00025a002089
Brachypodium KQK22056
Barley HORVU2Hr1G015440.1 , HORVU4Hr1G054770.1 , HORVU4Hr1G054770.2 , HORVU0Hr1G030030.1
Wheat TraesCS2A02G092900
Populus -


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cDNA sequences
Sobic.001G399900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G242700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsCML14 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
2 Sobic.001G138200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase 8 domain containing protein, putative, expressed -
3 Sobic.002G418000 expressed protein -
4 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
5 Sobic.006G274400 harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.004G246600 expressed protein -
7 Sobic.004G286800 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.001G219200 myb-related protein Myb4, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.006G158200 lectin-like receptor kinase, putative, expressed -
10 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -
11 Sobic.009G194400 expressed protein -
12 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
13 Sobic.002G269100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.004G295600 AP2 domain containing protein, expressed -
15 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
16 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
17 Sobic.001G321800 OsRhmbd7 - Putative Rhomboid homologue, expressed -
18 Sobic.002G251100 ternary complex factor MIP1, putative, expressed -
19 Sobic.010G104300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
20 Sobic.001G256800 dirigent, putative, expressed -


Gene co-expression network
sample Sobic001G399900 Sobic001G399900 Sobic009G242700 Sobic009G242700 Sobic001G399900--Sobic009G242700 Sobic001G138200 Sobic001G138200 Sobic001G399900--Sobic001G138200 Sobic002G418000 Sobic002G418000 Sobic001G399900--Sobic002G418000 Sobic001G322200 Sobic001G322200 Sobic001G399900--Sobic001G322200 Sobic006G274400 Sobic006G274400 Sobic001G399900--Sobic006G274400 Sobic004G246600 Sobic004G246600 Sobic001G399900--Sobic004G246600 Sobic004G286800 Sobic004G286800 Sobic001G399900--Sobic004G286800 Sobic001G219200 Sobic001G219200 Sobic001G399900--Sobic001G219200 Sobic006G158200 Sobic006G158200 Sobic001G399900--Sobic006G158200 Sobic009G242700--Sobic001G399900 Sobic001G321800 Sobic001G321800 Sobic009G242700--Sobic001G321800 Sobic009G242700--Sobic006G274400 Sobic009G242700--Sobic006G158200 Sobic009G242700--Sobic001G138200 Sobic009G242700--Sobic002G418000 Sobic006G205600 Sobic006G205600 Sobic009G242700--Sobic006G205600 Sobic006G070298 Sobic006G070298 Sobic009G242700--Sobic006G070298 Sobic010G234000 Sobic010G234000 Sobic009G242700--Sobic010G234000 Sobic002G269100 Sobic002G269100 Sobic001G138200--Sobic002G269100 Sobic001G100501 Sobic001G100501 Sobic001G138200--Sobic001G100501 Sobic002G388800 Sobic002G388800 Sobic001G138200--Sobic002G388800 Sobic002G225700 Sobic002G225700 Sobic001G138200--Sobic002G225700 Sobic001G138200--Sobic004G246600 Sobic001G295700 Sobic001G295700 Sobic001G138200--Sobic001G295700 Sobic004G097100 Sobic004G097100 Sobic001G138200--Sobic004G097100 Sobic003G207900 Sobic003G207900 Sobic001G138200--Sobic003G207900 Sobic001G143100 Sobic001G143100 Sobic001G138200--Sobic001G143100 Sobic003G415000 Sobic003G415000 Sobic002G418000--Sobic003G415000 Sobic002G418000--Sobic004G246600 Sobic004G229500 Sobic004G229500 Sobic002G418000--Sobic004G229500 Sobic004G308900 Sobic004G308900 Sobic002G418000--Sobic004G308900 Sobic007G148500 Sobic007G148500 Sobic002G418000--Sobic007G148500 Sobic007G122800 Sobic007G122800 Sobic002G418000--Sobic007G122800 Sobic002G184300 Sobic002G184300 Sobic002G418000--Sobic002G184300 Sobic009G032000 Sobic009G032000 Sobic002G418000--Sobic009G032000 Sobic003G049700 Sobic003G049700 Sobic002G418000--Sobic003G049700 Sobic009G248500 Sobic009G248500 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic009G027900 Sobic009G027900 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic003G228900 Sobic003G228900 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic006G274400--Sobic006G070298 Sobic006G159600 Sobic006G159600 Sobic006G274400--Sobic006G159600 Sobic002G385400 Sobic002G385400 Sobic006G274400--Sobic002G385400 Sobic001G464900 Sobic001G464900 Sobic006G274400--Sobic001G464900 Sobic002G051700 Sobic002G051700 Sobic006G274400--Sobic002G051700 Sobic001G399300 Sobic001G399300 Sobic006G274400--Sobic001G399300 Sobic001G162800 Sobic001G162800 Sobic006G274400--Sobic001G162800 Sobic006G274400--Sobic001G399900 Sobic006G274400--Sobic009G242700 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic005G013500 Sobic005G013500 Sobic004G246600--Sobic005G013500 Sobic002G358300 Sobic002G358300 Sobic004G246600--Sobic002G358300 Sobic004G246600--Sobic004G097100 Sobic004G246600--Sobic001G143100 Sobic004G246600--Sobic002G269100 Sobic004G246600--Sobic002G184300 Sobic004G273300 Sobic004G273300 Sobic004G286800--Sobic004G273300 Sobic001G425600 Sobic001G425600 Sobic004G286800--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic004G286800--Sobic001G425500 Sobic010G104300 Sobic010G104300 Sobic004G286800--Sobic010G104300 Sobic001G249266 Sobic001G249266 Sobic004G286800--Sobic001G249266 Sobic004G109700 Sobic004G109700 Sobic004G286800--Sobic004G109700 Sobic009G194400 Sobic009G194400 Sobic004G286800--Sobic009G194400 Sobic004G286800--Sobic001G399900 Sobic002G100832 Sobic002G100832 Sobic004G286800--Sobic002G100832 Sobic004G108200 Sobic004G108200 Sobic001G219200--Sobic004G108200 Sobic004G004500 Sobic004G004500 Sobic001G219200--Sobic004G004500 Sobic001G256700 Sobic001G256700 Sobic001G219200--Sobic001G256700 Sobic003G148300 Sobic003G148300 Sobic001G219200--Sobic003G148300 Sobic002G339000 Sobic002G339000 Sobic001G219200--Sobic002G339000 Sobic006G207100 Sobic006G207100 Sobic001G219200--Sobic006G207100 Sobic004G219800 Sobic004G219800 Sobic001G219200--Sobic004G219800 Sobic009G144700 Sobic009G144700 Sobic001G219200--Sobic009G144700 Sobic008G187001 Sobic008G187001 Sobic001G219200--Sobic008G187001 Sobic006G158266 Sobic006G158266 Sobic006G158200--Sobic006G158266 Sobic003G146400 Sobic003G146400 Sobic006G158200--Sobic003G146400 Sobic004G306300 Sobic004G306300 Sobic006G158200--Sobic004G306300 Sobic006G158200--Sobic006G159600 Sobic006G158200--Sobic001G322200 Sobic006G158200--Sobic001G399300 Sobic001G371900 Sobic001G371900 Sobic006G158200--Sobic001G371900 Sobic006G263600 Sobic006G263600 Sobic006G158200--Sobic006G263600 Sobic001G055600 Sobic001G055600 Sobic006G158200--Sobic001G055600
Octagon: transcription factors


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