Gene annotation
Transcriptome id Sobic.001G439200.3,Sobic.001G439200.2
Synonym Sb01g041290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thaumatin, putative, expressed
UniProt A0A1B6QPF1 , A0A1Z5SAG8
Pfam PF00314
Panther DB PTHR31048 PTHR31048:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38660 : Pathogenesis-related thaumatin superfamily protein
RAP-DB (Rice) LOC_Os03g14030.2,LOC_Os03g14030.1 : thaumatin, putative, expressed
MaizeGDB (Corn) Zm00025a045375 , Zm00025a005688 , Zm00025a001537 , Zm00025a052902 , Zm00025a034947
Brachypodium PNT77749 , KQJ96120 , PNT65919 , PNT65024 , KQJ96119 , KQK17299 , KQK16708 , KQK22606
Barley HORVU7Hr1G099650.1 , HORVU4Hr1G063730.6 , HORVU4Hr1G063730.5 , HORVU4Hr1G063730.3 , HORVU4Hr1G063730.2 , HORVU4Hr1G063730.1 , HORVU4Hr1G063730.7 , HORVU4Hr1G063730.4 , HORVU5Hr1G083260.3 , HORVU6Hr1G024780.1 , HORVU6Hr1G024780.2
Wheat TraesCS5B02G328400 , TraesCS4A02G070800 , TraesCS4A02G070800 , TraesCS7D02G517200 , TraesCS7D02G272100 , TraesCS5D02G334300 , TraesCS7A02G529500 , TraesCS6A02G129400 , TraesCS7A02G271800 , TraesCS5A02G328400 , TraesCS4D02G227500 , TraesCS4B02G226800 , TraesCS2D02G188700 , TraesCS6B02G157700 , TraesCS7B02G446200 , TraesCS7B02G446200 , TraesCS7D02G517300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G439200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G266500 Phosphoethanolamine N-methyltransferase XPL1 (At)(PubMedID : 27208977)@CPuORF25 - conserved peptide uORF-containing transcript, expressed K05929: E2.1.1.103, phosphoethanolamine N-methyltransferase
2 Sobic.007G189700 - -
3 Sobic.003G256700 expressed protein -
4 Sobic.003G431900 -(PubMedID : 26976818)@expressed protein K07562: nonsense-mediated mRNA decay protein 3
5 Sobic.004G073500 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by BR treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
6 Sobic.003G199800 expressed protein -
7 Sobic.001G011700 aspartokinase, chloroplast precursor, putative, expressed K00928: aspartate kinase
8 Sobic.001G406000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.13 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.009G104800 AMP deaminase, putative, expressed K01490: AMP deaminase
10 Sobic.003G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
11 Sobic.006G244000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed K17471: sulfate transporter 3
12 Sobic.004G125700 isochorismatase family protein, putative, expressed -
13 Sobic.010G030800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
14 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
15 Sobic.002G324500 PPDK regulatory protein(PubMedID : 26465154)@PPDK regulatory protein(PubMedID : 26465154)@-(PubMedID : 26976818)@pyruvate orthophosphate dikinase regulatory protein(PubMedID : 27016024)@pyruvate Pi dikinase regulatory protein, putative, expressed K09773: [pyruvate, water dikinase]-phosphate phosphotransferase / [pyruvate, water dikinase] kinase
16 Sobic.001G520800 expressed protein -
17 Sobic.002G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
19 Sobic.002G040100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
20 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase


Gene co-expression network
sample Sobic001G439200 Sobic001G439200 Sobic003G266500 Sobic003G266500 Sobic001G439200--Sobic003G266500 Sobic007G189700 Sobic007G189700 Sobic001G439200--Sobic007G189700 Sobic003G256700 Sobic003G256700 Sobic001G439200--Sobic003G256700 Sobic003G431900 Sobic003G431900 Sobic001G439200--Sobic003G431900 Sobic004G073500 Sobic004G073500 Sobic001G439200--Sobic004G073500 Sobic003G199800 Sobic003G199800 Sobic001G439200--Sobic003G199800 Sobic001G011700 Sobic001G011700 Sobic001G439200--Sobic001G011700 Sobic001G406000 Sobic001G406000 Sobic001G439200--Sobic001G406000 Sobic009G104800 Sobic009G104800 Sobic001G439200--Sobic009G104800 Sobic003G266500--Sobic001G439200 Sobic002G324500 Sobic002G324500 Sobic003G266500--Sobic002G324500 Sobic003G266500--Sobic004G073500 Sobic003G266500--Sobic003G256700 Sobic006G244000 Sobic006G244000 Sobic003G266500--Sobic006G244000 Sobic003G234200 Sobic003G234200 Sobic003G266500--Sobic003G234200 Sobic004G125700 Sobic004G125700 Sobic003G266500--Sobic004G125700 Sobic004G317500 Sobic004G317500 Sobic003G266500--Sobic004G317500 Sobic003G266500--Sobic009G104800 Sobic010G183100 Sobic010G183100 Sobic007G189700--Sobic010G183100 Sobic004G035700 Sobic004G035700 Sobic007G189700--Sobic004G035700 Sobic010G030800 Sobic010G030800 Sobic007G189700--Sobic010G030800 Sobic007G189700--Sobic003G199800 Sobic008G081200 Sobic008G081200 Sobic007G189700--Sobic008G081200 Sobic009G222200 Sobic009G222200 Sobic007G189700--Sobic009G222200 Sobic009G254600 Sobic009G254600 Sobic007G189700--Sobic009G254600 Sobic002G040100 Sobic002G040100 Sobic007G189700--Sobic002G040100 Sobic007G189700--Sobic001G406000 Sobic003G256700--Sobic003G431900 Sobic003G256700--Sobic006G244000 Sobic003G256700--Sobic002G324500 Sobic003G256700--Sobic004G125700 Sobic003G256700--Sobic009G104800 Sobic008G053200 Sobic008G053200 Sobic003G256700--Sobic008G053200 Sobic002G036000 Sobic002G036000 Sobic003G256700--Sobic002G036000 Sobic001G329400 Sobic001G329400 Sobic003G256700--Sobic001G329400 Sobic003G256700--Sobic003G234200 Sobic003G431900--Sobic008G053200 Sobic003G431900--Sobic003G234200 Sobic004G305800 Sobic004G305800 Sobic003G431900--Sobic004G305800 Sobic003G431900--Sobic003G256700 Sobic001G519800 Sobic001G519800 Sobic003G431900--Sobic001G519800 Sobic005G165500 Sobic005G165500 Sobic003G431900--Sobic005G165500 Sobic003G431900--Sobic002G324500 Sobic004G308700 Sobic004G308700 Sobic003G431900--Sobic004G308700 Sobic004G272100 Sobic004G272100 Sobic003G431900--Sobic004G272100 Sobic004G073500--Sobic003G266500 Sobic004G097000 Sobic004G097000 Sobic004G073500--Sobic004G097000 Sobic004G073500--Sobic001G439200 Sobic010G019700 Sobic010G019700 Sobic004G073500--Sobic010G019700 Sobic008G186400 Sobic008G186400 Sobic004G073500--Sobic008G186400 Sobic008G068200 Sobic008G068200 Sobic004G073500--Sobic008G068200 Sobic010G023700 Sobic010G023700 Sobic004G073500--Sobic010G023700 Sobic006G147300 Sobic006G147300 Sobic004G073500--Sobic006G147300 Sobic004G073500--Sobic003G431900 Sobic003G199800--Sobic002G040100 Sobic010G276400 Sobic010G276400 Sobic003G199800--Sobic010G276400 Sobic002G000500 Sobic002G000500 Sobic003G199800--Sobic002G000500 Sobic003G199800--Sobic010G183100 Sobic004G035500 Sobic004G035500 Sobic003G199800--Sobic004G035500 Sobic008G038300 Sobic008G038300 Sobic003G199800--Sobic008G038300 Sobic010G109500 Sobic010G109500 Sobic003G199800--Sobic010G109500 Sobic003G199800--Sobic007G189700 Sobic009G191300 Sobic009G191300 Sobic003G199800--Sobic009G191300 Sobic008G021300 Sobic008G021300 Sobic001G011700--Sobic008G021300 Sobic004G175500 Sobic004G175500 Sobic001G011700--Sobic004G175500 Sobic004G343300 Sobic004G343300 Sobic001G011700--Sobic004G343300 Sobic009G125400 Sobic009G125400 Sobic001G011700--Sobic009G125400 Sobic007G004800 Sobic007G004800 Sobic001G011700--Sobic007G004800 Sobic006G103400 Sobic006G103400 Sobic001G011700--Sobic006G103400 Sobic003G132100 Sobic003G132100 Sobic001G011700--Sobic003G132100 Sobic002G152700 Sobic002G152700 Sobic001G011700--Sobic002G152700 Sobic003G197400 Sobic003G197400 Sobic001G011700--Sobic003G197400 Sobic001G406000--Sobic006G244000 Sobic001G406000--Sobic007G189700 Sobic004G353700 Sobic004G353700 Sobic001G406000--Sobic004G353700 Sobic001G406000--Sobic010G030800 Sobic008G104601 Sobic008G104601 Sobic001G406000--Sobic008G104601 Sobic003G235500 Sobic003G235500 Sobic001G406000--Sobic003G235500 Sobic003G234400 Sobic003G234400 Sobic001G406000--Sobic003G234400 Sobic001G406000--Sobic001G329400 Sobic001G406000--Sobic003G431900 Sobic009G104800--Sobic004G125700 Sobic003G024300 Sobic003G024300 Sobic009G104800--Sobic003G024300 Sobic009G104800--Sobic001G329400 Sobic006G077400 Sobic006G077400 Sobic009G104800--Sobic006G077400 Sobic009G104800--Sobic006G244000 Sobic007G140800 Sobic007G140800 Sobic009G104800--Sobic007G140800 Sobic009G104800--Sobic003G256700 Sobic007G161500 Sobic007G161500 Sobic009G104800--Sobic007G161500 Sobic010G095000 Sobic010G095000 Sobic009G104800--Sobic010G095000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.