Gene annotation
Transcriptome id Sobic.001G478400.5,Sobic.001G478400.1,Sobic.001G478400.3,Sobic.001G478400.4,Sobic.001G478400.2
Synonym Sb01g044810, AGL22, SVP
Functional annotation MADS-box transcription factor family( (PubMedID : 26759170,(PubMedID : 24597475)
OsMADS47 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1B6QQ26 , A0A1B6QQ17 , A0A1Z5SB05 , A0A1B6QQ24 , A0A1Z5SB09
Pfam PF01486 PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF179 PTHR11945 PTHR11945:SF36
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G22540 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os03g08754.2,LOC_Os03g08754.1 : OsMADS47 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a008194 , Zm00025a016783 , Zm00025a000984
Brachypodium KQK13148 , KQK23235 , KQK23234 , KQK23236 , KQK23233
Barley HORVU4Hr1G077850.3 , HORVU4Hr1G077850.2 , HORVU4Hr1G077850.7 , HORVU4Hr1G077850.6 , HORVU4Hr1G077850.5 , HORVU4Hr1G077850.4 , HORVU4Hr1G077850.9 , HORVU4Hr1G077850.8 , HORVU4Hr1G077850.13 , HORVU4Hr1G077850.12 , HORVU4Hr1G077850.11 , HORVU4Hr1G077850.10 , HORVU4Hr1G077850.17 , HORVU4Hr1G077850.16 , HORVU4Hr1G077850.15 , HORVU4Hr1G077850.14
Wheat TraesCS4D02G301100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G478400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G025900 expressed protein -
2 Sobic.005G055150 - -
3 Sobic.006G258500 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
4 Sobic.004G118700 cbxX, chromosomal, putative, expressed -
5 Sobic.008G041700 TLD family protein, putative, expressed -
6 Sobic.001G479300 EAP30/Vps36 family domain containing protein, expressed K12188: SNF8, ESCRT-II complex subunit VPS22
7 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
8 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
9 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
10 Sobic.009G157500 MYB family transcription factor, putative, expressed -
11 Sobic.005G141801 - -
12 Sobic.002G283300 protein kinase family protein, putative, expressed -
13 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
14 Sobic.009G137800 expressed protein -
15 Sobic.K016900 arginyl-tRNA--protein transferase 1, putative, expressed -
16 Sobic.007G134600 agenet domain containing protein, expressed -
17 Sobic.005G187200 expressed protein -
18 Sobic.009G127900 - -
19 Sobic.003G012500 expressed protein -
20 Sobic.002G324200 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1


Gene co-expression network
sample Sobic001G478400 Sobic001G478400 Sobic008G025900 Sobic008G025900 Sobic001G478400--Sobic008G025900 Sobic005G055150 Sobic005G055150 Sobic001G478400--Sobic005G055150 Sobic006G258500 Sobic006G258500 Sobic001G478400--Sobic006G258500 Sobic004G118700 Sobic004G118700 Sobic001G478400--Sobic004G118700 Sobic008G041700 Sobic008G041700 Sobic001G478400--Sobic008G041700 Sobic001G479300 Sobic001G479300 Sobic001G478400--Sobic001G479300 Sobic010G074500 Sobic010G074500 Sobic001G478400--Sobic010G074500 Sobic001G479500 Sobic001G479500 Sobic001G478400--Sobic001G479500 Sobic010G026400 Sobic010G026400 Sobic001G478400--Sobic010G026400 Sobic002G224450 Sobic002G224450 Sobic008G025900--Sobic002G224450 Sobic005G139800 Sobic005G139800 Sobic008G025900--Sobic005G139800 Sobic004G121000 Sobic004G121000 Sobic008G025900--Sobic004G121000 Sobic005G221425 Sobic005G221425 Sobic008G025900--Sobic005G221425 Sobic009G209800 Sobic009G209800 Sobic008G025900--Sobic009G209800 Sobic001G240400 Sobic001G240400 Sobic008G025900--Sobic001G240400 Sobic009G157500 Sobic009G157500 Sobic008G025900--Sobic009G157500 Sobic005G110427 Sobic005G110427 Sobic008G025900--Sobic005G110427 Sobic008G049701 Sobic008G049701 Sobic008G025900--Sobic008G049701 Sobic006G009400 Sobic006G009400 Sobic005G055150--Sobic006G009400 Sobic005G141801 Sobic005G141801 Sobic005G055150--Sobic005G141801 Sobic005G055150--Sobic005G110427 Sobic001G111900 Sobic001G111900 Sobic005G055150--Sobic001G111900 Sobic006G262200 Sobic006G262200 Sobic005G055150--Sobic006G262200 Sobic009G127900 Sobic009G127900 Sobic005G055150--Sobic009G127900 Sobic002G410200 Sobic002G410200 Sobic005G055150--Sobic002G410200 Sobic005G055150--Sobic009G209800 Sobic007G178700 Sobic007G178700 Sobic005G055150--Sobic007G178700 Sobic010G056000 Sobic010G056000 Sobic006G258500--Sobic010G056000 Sobic004G290800 Sobic004G290800 Sobic006G258500--Sobic004G290800 Sobic009G215800 Sobic009G215800 Sobic006G258500--Sobic009G215800 Sobic007G134600 Sobic007G134600 Sobic006G258500--Sobic007G134600 Sobic006G258500--Sobic001G111900 Sobic001G107500 Sobic001G107500 Sobic006G258500--Sobic001G107500 Sobic009G134500 Sobic009G134500 Sobic006G258500--Sobic009G134500 Sobic003G383300 Sobic003G383300 Sobic006G258500--Sobic003G383300 Sobic006G258500--Sobic009G127900 Sobic001G024200 Sobic001G024200 Sobic004G118700--Sobic001G024200 Sobic008G068800 Sobic008G068800 Sobic004G118700--Sobic008G068800 Sobic004G212800 Sobic004G212800 Sobic004G118700--Sobic004G212800 Sobic004G118700--Sobic010G074500 Sobic002G283300 Sobic002G283300 Sobic004G118700--Sobic002G283300 Sobic003G044900 Sobic003G044900 Sobic004G118700--Sobic003G044900 Sobic004G016500 Sobic004G016500 Sobic004G118700--Sobic004G016500 Sobic001G046600 Sobic001G046600 Sobic004G118700--Sobic001G046600 Sobic003G424100 Sobic003G424100 Sobic004G118700--Sobic003G424100 Sobic008G041700--Sobic009G134500 Sobic010G264100 Sobic010G264100 Sobic008G041700--Sobic010G264100 Sobic007G011400 Sobic007G011400 Sobic008G041700--Sobic007G011400 Sobic005G187200 Sobic005G187200 Sobic008G041700--Sobic005G187200 Sobic005G149500 Sobic005G149500 Sobic008G041700--Sobic005G149500 Sobic008G041700--Sobic002G283300 Sobic007G137900 Sobic007G137900 Sobic008G041700--Sobic007G137900 Sobic010G263800 Sobic010G263800 Sobic008G041700--Sobic010G263800 Sobic008G041700--Sobic010G026400 Sobic004G150400 Sobic004G150400 Sobic001G479300--Sobic004G150400 Sobic007G205800 Sobic007G205800 Sobic001G479300--Sobic007G205800 Sobic009G087800 Sobic009G087800 Sobic001G479300--Sobic009G087800 Sobic002G284200 Sobic002G284200 Sobic001G479300--Sobic002G284200 Sobic001G479300--Sobic005G187200 Sobic003G324000 Sobic003G324000 Sobic001G479300--Sobic003G324000 Sobic004G119000 Sobic004G119000 Sobic001G479300--Sobic004G119000 Sobic007G150200 Sobic007G150200 Sobic001G479300--Sobic007G150200 Sobic003G093600 Sobic003G093600 Sobic001G479300--Sobic003G093600 Sobic010G074500--Sobic010G263800 Sobic010G074500--Sobic006G009400 Sobic007G094801 Sobic007G094801 Sobic010G074500--Sobic007G094801 Sobic010G074500--Sobic007G011400 Sobic010G074500--Sobic002G283300 Sobic010G074500--Sobic005G141801 Sobic009G156000 Sobic009G156000 Sobic010G074500--Sobic009G156000 Sobic004G143700 Sobic004G143700 Sobic010G074500--Sobic004G143700 Sobic010G074500--Sobic007G205800 Sobic003G057800 Sobic003G057800 Sobic001G479500--Sobic003G057800 Sobic005G130200 Sobic005G130200 Sobic001G479500--Sobic005G130200 Sobic010G248200 Sobic010G248200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic003G012500 Sobic003G012500 Sobic010G026400--Sobic003G012500 Sobic002G157300 Sobic002G157300 Sobic010G026400--Sobic002G157300 Sobic010G026400--Sobic009G127900 Sobic010G026400--Sobic006G009400 Sobic010G026400--Sobic007G011400 Sobic003G261300 Sobic003G261300 Sobic010G026400--Sobic003G261300 Sobic010G026400--Sobic010G263800 Sobic010G026400--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G026400--Sobic003G187400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.