Gene annotation
Transcriptome id Sobic.001G492800.1
Synonym Sb01g046050
Functional annotation expressed protein
UniProt C5WWU7
Pfam PF04788
Panther DB PTHR31300 PTHR31300:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06610 : Protein of unknown function (DUF620)
RAP-DB (Rice) LOC_Os03g07120.1 : expressed protein
MaizeGDB (Corn) Zm00025a000824
Brachypodium KQK23458
Barley -
Wheat TraesCS4B02G282900 , TraesCS4D02G281900 , TraesCS4A02G020600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G492800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G016300 BAG domain containing protein, expressed -
2 Sobic.003G373100 patellin protein, putative, expressed -
3 Sobic.002G139200 transferase family protein, putative, expressed -
4 Sobic.001G520900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CAMK_CAMK_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
5 Sobic.004G172100 serine/threonine-protein kinase, putative, expressed -
6 Sobic.010G076600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Serine/threonine-protein kinase RIPK(PubMedID : 31721651)@tyrosine protein kinase domain containing protein, putative, expressed -
7 Sobic.009G099000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
8 Sobic.003G198400 - -
9 Sobic.002G270000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BAG domain-containing protein, putative, expressed -
10 Sobic.001G526200 homeobox protein knotted-1, putative, expressed -
11 Sobic.004G244600 endoglucanase, putative, expressed -
12 Sobic.004G358700 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.010G080400 AP2 domain containing protein, expressed -
14 Sobic.004G257800 chloride transporter, chloride channel family, putative, expressed -
15 Sobic.006G242100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyltransferase family 43 protein, putative, expressed -
16 Sobic.006G087900 TKL_IRAK_CR4L.3 - The CR4L subfamily has homology with Crinkly4, expressed -
17 Sobic.004G052000 protein kinase, putative, expressed -
18 Sobic.004G042700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
19 Sobic.003G278700 heavy metal-associated domain containing protein, expressed -
20 Sobic.006G184400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family


Gene co-expression network
sample Sobic001G492800 Sobic001G492800 Sobic010G016300 Sobic010G016300 Sobic001G492800--Sobic010G016300 Sobic003G373100 Sobic003G373100 Sobic001G492800--Sobic003G373100 Sobic002G139200 Sobic002G139200 Sobic001G492800--Sobic002G139200 Sobic001G520900 Sobic001G520900 Sobic001G492800--Sobic001G520900 Sobic004G172100 Sobic004G172100 Sobic001G492800--Sobic004G172100 Sobic010G076600 Sobic010G076600 Sobic001G492800--Sobic010G076600 Sobic009G099000 Sobic009G099000 Sobic001G492800--Sobic009G099000 Sobic003G198400 Sobic003G198400 Sobic001G492800--Sobic003G198400 Sobic002G270000 Sobic002G270000 Sobic001G492800--Sobic002G270000 Sobic006G009900 Sobic006G009900 Sobic010G016300--Sobic006G009900 Sobic007G180900 Sobic007G180900 Sobic010G016300--Sobic007G180900 Sobic003G031400 Sobic003G031400 Sobic010G016300--Sobic003G031400 Sobic010G016300--Sobic001G492800 Sobic010G016300--Sobic002G139200 Sobic003G443200 Sobic003G443200 Sobic010G016300--Sobic003G443200 Sobic004G007800 Sobic004G007800 Sobic010G016300--Sobic004G007800 Sobic002G075500 Sobic002G075500 Sobic010G016300--Sobic002G075500 Sobic004G319600 Sobic004G319600 Sobic010G016300--Sobic004G319600 Sobic009G073300 Sobic009G073300 Sobic003G373100--Sobic009G073300 Sobic001G532200 Sobic001G532200 Sobic003G373100--Sobic001G532200 Sobic004G212300 Sobic004G212300 Sobic003G373100--Sobic004G212300 Sobic001G113700 Sobic001G113700 Sobic003G373100--Sobic001G113700 Sobic009G208800 Sobic009G208800 Sobic003G373100--Sobic009G208800 Sobic008G151300 Sobic008G151300 Sobic003G373100--Sobic008G151300 Sobic004G288700 Sobic004G288700 Sobic003G373100--Sobic004G288700 Sobic001G516600 Sobic001G516600 Sobic003G373100--Sobic001G516600 Sobic005G231700 Sobic005G231700 Sobic003G373100--Sobic005G231700 Sobic004G326000 Sobic004G326000 Sobic002G139200--Sobic004G326000 Sobic002G279300 Sobic002G279300 Sobic002G139200--Sobic002G279300 Sobic004G176800 Sobic004G176800 Sobic002G139200--Sobic004G176800 Sobic001G077200 Sobic001G077200 Sobic002G139200--Sobic001G077200 Sobic003G300100 Sobic003G300100 Sobic002G139200--Sobic003G300100 Sobic007G168400 Sobic007G168400 Sobic002G139200--Sobic007G168400 Sobic002G390600 Sobic002G390600 Sobic002G139200--Sobic002G390600 Sobic001G008400 Sobic001G008400 Sobic002G139200--Sobic001G008400 Sobic001G458900 Sobic001G458900 Sobic002G139200--Sobic001G458900 Sobic009G221600 Sobic009G221600 Sobic001G520900--Sobic009G221600 Sobic004G042700 Sobic004G042700 Sobic001G520900--Sobic004G042700 Sobic004G099500 Sobic004G099500 Sobic001G520900--Sobic004G099500 Sobic001G425300 Sobic001G425300 Sobic001G520900--Sobic001G425300 Sobic003G057600 Sobic003G057600 Sobic001G520900--Sobic003G057600 Sobic002G005400 Sobic002G005400 Sobic001G520900--Sobic002G005400 Sobic009G015000 Sobic009G015000 Sobic001G520900--Sobic009G015000 Sobic002G253000 Sobic002G253000 Sobic001G520900--Sobic002G253000 Sobic009G224500 Sobic009G224500 Sobic001G520900--Sobic009G224500 Sobic006G242100 Sobic006G242100 Sobic004G172100--Sobic006G242100 Sobic003G095400 Sobic003G095400 Sobic004G172100--Sobic003G095400 Sobic009G030200 Sobic009G030200 Sobic004G172100--Sobic009G030200 Sobic006G087900 Sobic006G087900 Sobic004G172100--Sobic006G087900 Sobic009G102600 Sobic009G102600 Sobic004G172100--Sobic009G102600 Sobic003G278700 Sobic003G278700 Sobic004G172100--Sobic003G278700 Sobic004G172100--Sobic009G099000 Sobic004G257800 Sobic004G257800 Sobic004G172100--Sobic004G257800 Sobic001G294400 Sobic001G294400 Sobic004G172100--Sobic001G294400 Sobic006G184400 Sobic006G184400 Sobic010G076600--Sobic006G184400 Sobic001G209800 Sobic001G209800 Sobic010G076600--Sobic001G209800 Sobic001G476400 Sobic001G476400 Sobic010G076600--Sobic001G476400 Sobic001G473900 Sobic001G473900 Sobic010G076600--Sobic001G473900 Sobic009G217600 Sobic009G217600 Sobic010G076600--Sobic009G217600 Sobic003G338900 Sobic003G338900 Sobic010G076600--Sobic003G338900 Sobic008G036000 Sobic008G036000 Sobic010G076600--Sobic008G036000 Sobic006G095600 Sobic006G095600 Sobic010G076600--Sobic006G095600 Sobic003G296700 Sobic003G296700 Sobic010G076600--Sobic003G296700 Sobic009G099000--Sobic003G278700 Sobic001G157400 Sobic001G157400 Sobic009G099000--Sobic001G157400 Sobic006G026400 Sobic006G026400 Sobic009G099000--Sobic006G026400 Sobic001G050800 Sobic001G050800 Sobic009G099000--Sobic001G050800 Sobic001G460300 Sobic001G460300 Sobic009G099000--Sobic001G460300 Sobic008G040900 Sobic008G040900 Sobic009G099000--Sobic008G040900 Sobic006G194600 Sobic006G194600 Sobic009G099000--Sobic006G194600 Sobic009G099000--Sobic005G231700 Sobic009G099000--Sobic004G172100 Sobic003G361300 Sobic003G361300 Sobic003G198400--Sobic003G361300 Sobic003G198400--Sobic003G278700 Sobic001G450800 Sobic001G450800 Sobic003G198400--Sobic001G450800 Sobic003G198400--Sobic001G157400 Sobic003G198400--Sobic007G180900 Sobic003G198400--Sobic009G099000 Sobic003G198400--Sobic004G257800 Sobic003G198400--Sobic001G460300 Sobic009G216900 Sobic009G216900 Sobic003G198400--Sobic009G216900 Sobic001G084100 Sobic001G084100 Sobic002G270000--Sobic001G084100 Sobic002G128800 Sobic002G128800 Sobic002G270000--Sobic002G128800 Sobic010G238800 Sobic010G238800 Sobic002G270000--Sobic010G238800 Sobic001G063500 Sobic001G063500 Sobic002G270000--Sobic001G063500 Sobic009G215000 Sobic009G215000 Sobic002G270000--Sobic009G215000 Sobic002G252000 Sobic002G252000 Sobic002G270000--Sobic002G252000 Sobic006G156000 Sobic006G156000 Sobic002G270000--Sobic006G156000 Sobic002G396400 Sobic002G396400 Sobic002G270000--Sobic002G396400 Sobic010G052200 Sobic010G052200 Sobic002G270000--Sobic010G052200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.