Gene annotation
Transcriptome id Sobic.001G520900.1
Synonym CPK6, ATCDPK3, ATCPK6, Sb01g048570
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
CAMK_CAMK_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C5WZY9
Pfam PF07714 PF13499
Panther DB PTHR24349:SF119 PTHR24349
NCBI CDD KOG0032; Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily
KEGG Orthology K13412; calcium-dependent protein kinase
Gene Ontology GO:0004672; protein kinase activity GO:0006468protein phosphorylation


Orthologs (automatic annotation)
TAIR AT2G17290 : Calcium-dependent protein kinase family protein
RAP-DB (Rice) LOC_Os03g03660.3 : CAMK_CAMK_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a000391
Brachypodium -
Barley HORVU4Hr1G082790.10 , HORVU4Hr1G082790.11 , HORVU4Hr1G082790.1 , HORVU4Hr1G082790.3 , HORVU4Hr1G082790.4 , HORVU4Hr1G082790.6 , HORVU4Hr1G082790.7 , HORVU4Hr1G082790.8 , HORVU4Hr1G082790.9
Wheat TraesCS4D02G318400 , TraesCS4D02G318400 , TraesCS4B02G321800
Populus -


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cDNA sequences
Sobic.001G520900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G221600 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.004G042700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
3 Sobic.004G099500 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
4 Sobic.001G425300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G057600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G005400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
7 Sobic.009G015000 expressed protein -
8 Sobic.002G253000 no apical meristem protein, putative, expressed -
9 Sobic.009G224500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.010G057100 expressed protein K02983: RP-S30e, small subunit ribosomal protein S30e
11 Sobic.001G477200 expressed protein K08505: protein transport protein SFT1
12 Sobic.001G492800 expressed protein -
13 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.002G291066 - K11254: histone H4
15 Sobic.004G128000 expressed protein -
16 Sobic.002G245900 AGC_PVPK_like_CDK8.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.001G062600 aldehyde oxidase, putative, expressed -
18 Sobic.003G338966 - -
19 Sobic.005G016600 DUF567 domain containing protein, putative, expressed -
20 Sobic.006G244800 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein


Gene co-expression network
sample Sobic001G520900 Sobic001G520900 Sobic009G221600 Sobic009G221600 Sobic001G520900--Sobic009G221600 Sobic004G042700 Sobic004G042700 Sobic001G520900--Sobic004G042700 Sobic004G099500 Sobic004G099500 Sobic001G520900--Sobic004G099500 Sobic001G425300 Sobic001G425300 Sobic001G520900--Sobic001G425300 Sobic003G057600 Sobic003G057600 Sobic001G520900--Sobic003G057600 Sobic002G005400 Sobic002G005400 Sobic001G520900--Sobic002G005400 Sobic009G015000 Sobic009G015000 Sobic001G520900--Sobic009G015000 Sobic002G253000 Sobic002G253000 Sobic001G520900--Sobic002G253000 Sobic009G224500 Sobic009G224500 Sobic001G520900--Sobic009G224500 Sobic009G221600--Sobic004G099500 Sobic007G045700 Sobic007G045700 Sobic009G221600--Sobic007G045700 Sobic004G271400 Sobic004G271400 Sobic009G221600--Sobic004G271400 Sobic002G414600 Sobic002G414600 Sobic009G221600--Sobic002G414600 Sobic002G414700 Sobic002G414700 Sobic009G221600--Sobic002G414700 Sobic006G136800 Sobic006G136800 Sobic009G221600--Sobic006G136800 Sobic010G057100 Sobic010G057100 Sobic009G221600--Sobic010G057100 Sobic008G041400 Sobic008G041400 Sobic009G221600--Sobic008G041400 Sobic001G252300 Sobic001G252300 Sobic009G221600--Sobic001G252300 Sobic001G532200 Sobic001G532200 Sobic004G042700--Sobic001G532200 Sobic003G037800 Sobic003G037800 Sobic004G042700--Sobic003G037800 Sobic010G052200 Sobic010G052200 Sobic004G042700--Sobic010G052200 Sobic004G212300 Sobic004G212300 Sobic004G042700--Sobic004G212300 Sobic001G516600 Sobic001G516600 Sobic004G042700--Sobic001G516600 Sobic003G319500 Sobic003G319500 Sobic004G042700--Sobic003G319500 Sobic002G245900 Sobic002G245900 Sobic004G042700--Sobic002G245900 Sobic002G202600 Sobic002G202600 Sobic004G042700--Sobic002G202600 Sobic002G176100 Sobic002G176100 Sobic004G042700--Sobic002G176100 Sobic004G099500--Sobic010G057100 Sobic004G335600 Sobic004G335600 Sobic004G099500--Sobic004G335600 Sobic004G099500--Sobic009G015000 Sobic003G338966 Sobic003G338966 Sobic004G099500--Sobic003G338966 Sobic008G172100 Sobic008G172100 Sobic004G099500--Sobic008G172100 Sobic004G099500--Sobic007G045700 Sobic003G057366 Sobic003G057366 Sobic004G099500--Sobic003G057366 Sobic004G099500--Sobic004G271400 Sobic003G322532 Sobic003G322532 Sobic004G099500--Sobic003G322532 Sobic002G318501 Sobic002G318501 Sobic001G425300--Sobic002G318501 Sobic005G139075 Sobic005G139075 Sobic001G425300--Sobic005G139075 Sobic001G425300--Sobic003G322532 Sobic001G112100 Sobic001G112100 Sobic001G425300--Sobic001G112100 Sobic001G351000 Sobic001G351000 Sobic001G425300--Sobic001G351000 Sobic001G459800 Sobic001G459800 Sobic001G425300--Sobic001G459800 Sobic005G011300 Sobic005G011300 Sobic001G425300--Sobic005G011300 Sobic002G314700 Sobic002G314700 Sobic001G425300--Sobic002G314700 Sobic003G432700 Sobic003G432700 Sobic001G425300--Sobic003G432700 Sobic009G008300 Sobic009G008300 Sobic003G057600--Sobic009G008300 Sobic003G360600 Sobic003G360600 Sobic003G057600--Sobic003G360600 Sobic001G161601 Sobic001G161601 Sobic003G057600--Sobic001G161601 Sobic002G050400 Sobic002G050400 Sobic003G057600--Sobic002G050400 Sobic001G395800 Sobic001G395800 Sobic003G057600--Sobic001G395800 Sobic001G161500 Sobic001G161500 Sobic003G057600--Sobic001G161500 Sobic003G057600--Sobic001G112100 Sobic006G172550 Sobic006G172550 Sobic003G057600--Sobic006G172550 Sobic003G399600 Sobic003G399600 Sobic003G057600--Sobic003G399600 Sobic002G005400--Sobic003G057600 Sobic002G005400--Sobic003G057366 Sobic006G257100 Sobic006G257100 Sobic002G005400--Sobic006G257100 Sobic009G123000 Sobic009G123000 Sobic002G005400--Sobic009G123000 Sobic007G172300 Sobic007G172300 Sobic002G005400--Sobic007G172300 Sobic003G395500 Sobic003G395500 Sobic002G005400--Sobic003G395500 Sobic002G005400--Sobic002G050400 Sobic006G166700 Sobic006G166700 Sobic002G005400--Sobic006G166700 Sobic002G005400--Sobic004G099500 Sobic009G015000--Sobic010G057100 Sobic009G015000--Sobic004G099500 Sobic004G128000 Sobic004G128000 Sobic009G015000--Sobic004G128000 Sobic009G015000--Sobic007G172300 Sobic009G015000--Sobic004G335600 Sobic009G015000--Sobic003G322532 Sobic009G015000--Sobic002G253000 Sobic009G015000--Sobic003G057366 Sobic009G015000--Sobic003G395500 Sobic002G253000--Sobic002G318501 Sobic002G253000--Sobic010G057100 Sobic002G253000--Sobic009G015000 Sobic005G016600 Sobic005G016600 Sobic002G253000--Sobic005G016600 Sobic002G253000--Sobic002G314700 Sobic004G342900 Sobic004G342900 Sobic002G253000--Sobic004G342900 Sobic002G253000--Sobic004G099500 Sobic002G253000--Sobic004G128000 Sobic001G062600 Sobic001G062600 Sobic002G253000--Sobic001G062600 Sobic001G471200 Sobic001G471200 Sobic009G224500--Sobic001G471200 Sobic006G103000 Sobic006G103000 Sobic009G224500--Sobic006G103000 Sobic009G240600 Sobic009G240600 Sobic009G224500--Sobic009G240600 Sobic002G329000 Sobic002G329000 Sobic009G224500--Sobic002G329000 Sobic001G192200 Sobic001G192200 Sobic009G224500--Sobic001G192200 Sobic007G002800 Sobic007G002800 Sobic009G224500--Sobic007G002800 Sobic001G231700 Sobic001G231700 Sobic009G224500--Sobic001G231700 Sobic004G228500 Sobic004G228500 Sobic009G224500--Sobic004G228500 Sobic005G093000 Sobic005G093000 Sobic009G224500--Sobic005G093000
Octagon: transcription factors


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