Gene annotation
Transcriptome id Sobic.002G016600.1
Synonym Sb02g001620
Functional annotation OsFBD13 - F-box and FBD domain containing protein, expressed
UniProt A0A1W0W1X7
Pfam -
Panther DB PTHR32212 PTHR32212:SF61
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G03220 : Protein with RNI-like/FBD-like domains
RAP-DB (Rice) LOC_Os07g02760.1 : OsFBD13 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK21107
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G032200 DNA methyltransferase protein, putative, expressed -
2 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
3 Sobic.001G023800 expressed protein -
4 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
6 Sobic.002G252100 methyl-binding domain protein MBD, putative, expressed -
7 Sobic.010G235700 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
9 Sobic.007G187600 pentatricopeptide, putative, expressed -
10 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
11 Sobic.004G010500 OsFBX52 - F-box domain containing protein, expressed -
12 Sobic.001G013300 SWIM zinc finger family protein, putative, expressed -
13 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
14 Sobic.003G221500 CENP-C1, putative, expressed -
15 Sobic.004G111000 bromodomain containing protein, expressed -
16 Sobic.009G045200 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.002G361400 frigida, putative, expressed -
18 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
19 Sobic.005G150900 growth regulating factor protein, putative, expressed -
20 Sobic.004G006600 transcription factor jumonji, putative, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase


Gene co-expression network
sample Sobic002G016600 Sobic002G016600 Sobic009G032200 Sobic009G032200 Sobic002G016600--Sobic009G032200 Sobic002G245000 Sobic002G245000 Sobic002G016600--Sobic002G245000 Sobic001G023800 Sobic001G023800 Sobic002G016600--Sobic001G023800 Sobic001G004100 Sobic001G004100 Sobic002G016600--Sobic001G004100 Sobic004G285000 Sobic004G285000 Sobic002G016600--Sobic004G285000 Sobic002G252100 Sobic002G252100 Sobic002G016600--Sobic002G252100 Sobic010G235700 Sobic010G235700 Sobic002G016600--Sobic010G235700 Sobic005G120700 Sobic005G120700 Sobic002G016600--Sobic005G120700 Sobic007G187600 Sobic007G187600 Sobic002G016600--Sobic007G187600 Sobic010G236200 Sobic010G236200 Sobic009G032200--Sobic010G236200 Sobic010G233000 Sobic010G233000 Sobic009G032200--Sobic010G233000 Sobic010G269300 Sobic010G269300 Sobic009G032200--Sobic010G269300 Sobic004G043750 Sobic004G043750 Sobic009G032200--Sobic004G043750 Sobic008G057000 Sobic008G057000 Sobic009G032200--Sobic008G057000 Sobic009G257500 Sobic009G257500 Sobic009G032200--Sobic009G257500 Sobic003G221500 Sobic003G221500 Sobic009G032200--Sobic003G221500 Sobic010G215900 Sobic010G215900 Sobic009G032200--Sobic010G215900 Sobic001G135500 Sobic001G135500 Sobic009G032200--Sobic001G135500 Sobic003G212900 Sobic003G212900 Sobic002G245000--Sobic003G212900 Sobic007G000200 Sobic007G000200 Sobic002G245000--Sobic007G000200 Sobic002G029100 Sobic002G029100 Sobic002G245000--Sobic002G029100 Sobic001G542450 Sobic001G542450 Sobic002G245000--Sobic001G542450 Sobic002G245000--Sobic001G135500 Sobic003G062300 Sobic003G062300 Sobic002G245000--Sobic003G062300 Sobic008G002300 Sobic008G002300 Sobic002G245000--Sobic008G002300 Sobic009G020500 Sobic009G020500 Sobic002G245000--Sobic009G020500 Sobic006G032300 Sobic006G032300 Sobic002G245000--Sobic006G032300 Sobic010G266500 Sobic010G266500 Sobic001G023800--Sobic010G266500 Sobic001G023800--Sobic007G187600 Sobic010G186600 Sobic010G186600 Sobic001G023800--Sobic010G186600 Sobic002G005000 Sobic002G005000 Sobic001G023800--Sobic002G005000 Sobic001G373000 Sobic001G373000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G013300 Sobic001G013300 Sobic001G023800--Sobic001G013300 Sobic008G164600 Sobic008G164600 Sobic001G023800--Sobic008G164600 Sobic001G291800 Sobic001G291800 Sobic001G023800--Sobic001G291800 Sobic004G031300 Sobic004G031300 Sobic001G004100--Sobic004G031300 Sobic001G004100--Sobic007G187600 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic004G086200 Sobic004G086200 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic004G285000--Sobic003G427100 Sobic009G151200 Sobic009G151200 Sobic004G285000--Sobic009G151200 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic004G285000--Sobic001G013300 Sobic006G245900 Sobic006G245900 Sobic002G252100--Sobic006G245900 Sobic003G123100 Sobic003G123100 Sobic002G252100--Sobic003G123100 Sobic001G239800 Sobic001G239800 Sobic002G252100--Sobic001G239800 Sobic002G252100--Sobic001G346900 Sobic002G371600 Sobic002G371600 Sobic002G252100--Sobic002G371600 Sobic006G270600 Sobic006G270600 Sobic002G252100--Sobic006G270600 Sobic001G098400 Sobic001G098400 Sobic002G252100--Sobic001G098400 Sobic004G315500 Sobic004G315500 Sobic002G252100--Sobic004G315500 Sobic007G014800 Sobic007G014800 Sobic002G252100--Sobic007G014800 Sobic004G278900 Sobic004G278900 Sobic010G235700--Sobic004G278900 Sobic003G010900 Sobic003G010900 Sobic010G235700--Sobic003G010900 Sobic007G081900 Sobic007G081900 Sobic010G235700--Sobic007G081900 Sobic004G241600 Sobic004G241600 Sobic010G235700--Sobic004G241600 Sobic001G123600 Sobic001G123600 Sobic010G235700--Sobic001G123600 Sobic010G235700--Sobic009G032200 Sobic006G091000 Sobic006G091000 Sobic010G235700--Sobic006G091000 Sobic002G430900 Sobic002G430900 Sobic010G235700--Sobic002G430900 Sobic010G235700--Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic004G287100 Sobic004G287100 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic005G120700--Sobic002G252100 Sobic001G042200 Sobic001G042200 Sobic007G187600--Sobic001G042200 Sobic007G187600--Sobic010G266500 Sobic001G168900 Sobic001G168900 Sobic007G187600--Sobic001G168900 Sobic010G077500 Sobic010G077500 Sobic007G187600--Sobic010G077500 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic007G187600--Sobic001G346900 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700
Octagon: transcription factors


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