Gene annotation
Transcriptome id Sobic.002G041000.1
Synonym Sb02g003510
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
UniProt C5XA84
Pfam PF02544
Panther DB PTHR10556 PTHR10556:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016627; oxidoreductase activity, acting on the CH-CH group of donors GO:0016021integral component of membrane GO:0006629lipid metabolic process GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT5G16010 : 3-oxo-5-alpha-steroid 4-dehydrogenase family protein
RAP-DB (Rice) LOC_Os07g06800.1 : 3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a045065 , Zm00025a045066 , Zm00025a016142
Brachypodium PNT77029 , KQK20823 , KQK20822
Barley HORVU1Hr1G013970.3 , HORVU1Hr1G013970.2 , HORVU1Hr1G013970.1
Wheat TraesCS2D02G249800 , TraesCS2D02G114200 , TraesCS2B02G269300 , TraesCS2A02G113600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G352200 heavy metal-associated domain containing protein, expressed -
2 Sobic.003G287500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
3 Sobic.003G327800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
4 Sobic.001G065800 similar to Glutathione transferase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
6 Sobic.002G102066 - -
7 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
8 Sobic.003G373600 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
9 Sobic.003G157900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycine-rich protein, putative, expressed -
10 Sobic.007G016600 expressed protein -
11 Sobic.002G338800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
12 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
13 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase
14 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
15 Sobic.004G267700 hydrolase, alpha/beta fold family domain containing protein, expressed -
16 Sobic.001G366200 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
17 Sobic.001G438000 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@HSP21 Heat shock protein 21("PubMedID : 26759170,PubMedID : 24597475")@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
18 Sobic.003G154400 OsSCP3 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.008G064500 TPR domain protein, putative, expressed -
20 Sobic.001G112900 expressed protein -


Gene co-expression network
sample Sobic002G041000 Sobic002G041000 Sobic001G352200 Sobic001G352200 Sobic002G041000--Sobic001G352200 Sobic003G287500 Sobic003G287500 Sobic002G041000--Sobic003G287500 Sobic003G327800 Sobic003G327800 Sobic002G041000--Sobic003G327800 Sobic001G065800 Sobic001G065800 Sobic002G041000--Sobic001G065800 Sobic003G428600 Sobic003G428600 Sobic002G041000--Sobic003G428600 Sobic002G102066 Sobic002G102066 Sobic002G041000--Sobic002G102066 Sobic004G305900 Sobic004G305900 Sobic002G041000--Sobic004G305900 Sobic003G373600 Sobic003G373600 Sobic002G041000--Sobic003G373600 Sobic003G157900 Sobic003G157900 Sobic002G041000--Sobic003G157900 Sobic001G352200--Sobic004G305900 Sobic001G352200--Sobic003G428600 Sobic008G088821 Sobic008G088821 Sobic001G352200--Sobic008G088821 Sobic001G167900 Sobic001G167900 Sobic001G352200--Sobic001G167900 Sobic006G140500 Sobic006G140500 Sobic001G352200--Sobic006G140500 Sobic003G103300 Sobic003G103300 Sobic001G352200--Sobic003G103300 Sobic004G268400 Sobic004G268400 Sobic001G352200--Sobic004G268400 Sobic004G028300 Sobic004G028300 Sobic001G352200--Sobic004G028300 Sobic001G018000 Sobic001G018000 Sobic001G352200--Sobic001G018000 Sobic003G287500--Sobic001G065800 Sobic001G393500 Sobic001G393500 Sobic003G287500--Sobic001G393500 Sobic002G204200 Sobic002G204200 Sobic003G287500--Sobic002G204200 Sobic009G068200 Sobic009G068200 Sobic003G287500--Sobic009G068200 Sobic001G106700 Sobic001G106700 Sobic003G287500--Sobic001G106700 Sobic006G099700 Sobic006G099700 Sobic003G287500--Sobic006G099700 Sobic009G185800 Sobic009G185800 Sobic003G287500--Sobic009G185800 Sobic003G287500--Sobic002G041000 Sobic005G082600 Sobic005G082600 Sobic003G287500--Sobic005G082600 Sobic003G327800--Sobic003G428600 Sobic002G338800 Sobic002G338800 Sobic003G327800--Sobic002G338800 Sobic003G355500 Sobic003G355500 Sobic003G327800--Sobic003G355500 Sobic005G134100 Sobic005G134100 Sobic003G327800--Sobic005G134100 Sobic003G186800 Sobic003G186800 Sobic003G327800--Sobic003G186800 Sobic009G245000 Sobic009G245000 Sobic003G327800--Sobic009G245000 Sobic003G327800--Sobic001G352200 Sobic009G123300 Sobic009G123300 Sobic003G327800--Sobic009G123300 Sobic005G062700 Sobic005G062700 Sobic003G327800--Sobic005G062700 Sobic003G136000 Sobic003G136000 Sobic001G065800--Sobic003G136000 Sobic009G243200 Sobic009G243200 Sobic001G065800--Sobic009G243200 Sobic002G250900 Sobic002G250900 Sobic001G065800--Sobic002G250900 Sobic001G032800 Sobic001G032800 Sobic001G065800--Sobic001G032800 Sobic010G223600 Sobic010G223600 Sobic001G065800--Sobic010G223600 Sobic001G425500 Sobic001G425500 Sobic001G065800--Sobic001G425500 Sobic009G194400 Sobic009G194400 Sobic001G065800--Sobic009G194400 Sobic006G207000 Sobic006G207000 Sobic001G065800--Sobic006G207000 Sobic010G196600 Sobic010G196600 Sobic001G065800--Sobic010G196600 Sobic003G304300 Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic010G101000 Sobic010G101000 Sobic003G428600--Sobic010G101000 Sobic003G428600--Sobic003G186800 Sobic010G104700 Sobic010G104700 Sobic003G428600--Sobic010G104700 Sobic002G351200 Sobic002G351200 Sobic003G428600--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic001G112900 Sobic001G112900 Sobic003G428600--Sobic001G112900 Sobic003G428600--Sobic004G268400 Sobic001G438000 Sobic001G438000 Sobic002G102066--Sobic001G438000 Sobic006G057500 Sobic006G057500 Sobic002G102066--Sobic006G057500 Sobic002G100832 Sobic002G100832 Sobic002G102066--Sobic002G100832 Sobic007G169500 Sobic007G169500 Sobic002G102066--Sobic007G169500 Sobic002G102132 Sobic002G102132 Sobic002G102066--Sobic002G102132 Sobic003G303400 Sobic003G303400 Sobic002G102066--Sobic003G303400 Sobic008G054150 Sobic008G054150 Sobic002G102066--Sobic008G054150 Sobic004G165800 Sobic004G165800 Sobic002G102066--Sobic004G165800 Sobic005G120201 Sobic005G120201 Sobic002G102066--Sobic005G120201 Sobic001G015200 Sobic001G015200 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic005G028800 Sobic005G028800 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic004G305900--Sobic001G167900 Sobic007G166300 Sobic007G166300 Sobic004G305900--Sobic007G166300 Sobic004G305900--Sobic010G101000 Sobic004G305900--Sobic004G028300 Sobic003G373600--Sobic003G157900 Sobic003G373600--Sobic005G062700 Sobic003G425300 Sobic003G425300 Sobic003G373600--Sobic003G425300 Sobic003G381700 Sobic003G381700 Sobic003G373600--Sobic003G381700 Sobic005G172400 Sobic005G172400 Sobic003G373600--Sobic005G172400 Sobic001G276300 Sobic001G276300 Sobic003G373600--Sobic001G276300 Sobic007G079400 Sobic007G079400 Sobic003G373600--Sobic007G079400 Sobic008G077500 Sobic008G077500 Sobic003G373600--Sobic008G077500 Sobic008G187100 Sobic008G187100 Sobic003G373600--Sobic008G187100 Sobic007G090900 Sobic007G090900 Sobic003G157900--Sobic007G090900 Sobic006G212800 Sobic006G212800 Sobic003G157900--Sobic006G212800 Sobic003G380200 Sobic003G380200 Sobic003G157900--Sobic003G380200 Sobic009G103000 Sobic009G103000 Sobic003G157900--Sobic009G103000 Sobic002G136100 Sobic002G136100 Sobic003G157900--Sobic002G136100 Sobic002G275100 Sobic002G275100 Sobic003G157900--Sobic002G275100 Sobic004G267700 Sobic004G267700 Sobic003G157900--Sobic004G267700 Sobic002G162400 Sobic002G162400 Sobic003G157900--Sobic002G162400 Sobic006G213700 Sobic006G213700 Sobic003G157900--Sobic006G213700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.