Gene annotation
Transcriptome id Sobic.001G352200.2
Synonym HMA6, PAA1, Sb01g033700
Functional annotation heavy metal-associated domain containing protein, expressed
UniProt A0A1Z5S975
Pfam PF00403
Panther DB PTHR24093 PTHR24093:SF336
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33520 : P-type ATP-ase 1
RAP-DB (Rice) LOC_Os03g27040.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052092
Brachypodium KQK21452
Barley -
Wheat TraesCS5A02G030100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G305900 heat shock protein DnaJ, putative, expressed -
2 Sobic.003G428600 amidohydrolase, putative, expressed K07047: N-substituted formamide deformylase
3 Sobic.008G088821 - K05356: SPS, all-trans-nonaprenyl-diphosphate synthase
4 Sobic.001G167900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
5 Sobic.006G140500 photosystem-II repair protein, putative, expressed -
6 Sobic.003G103300 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed K00099: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
7 Sobic.004G268400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein, putative, expressed -
8 Sobic.004G028300 expressed protein -
9 Sobic.001G018000 amine oxidase, flavin-containing, domain containing protein, expressed -
10 Sobic.004G124400 uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed -
11 Sobic.001G015200 Unnamed(PubMedID : 24676859)@S1 RNA binding domain containing protein, expressed -
12 Sobic.009G119300 peptide chain release factor 2, putative, expressed -
13 Sobic.005G004500 ferritin-1, chloroplast precursor, putative, expressed K00522: ferritin heavy chain
14 Sobic.005G062700 nifU, putative, expressed -
15 Sobic.005G028800 astaxanthin synthase KC28, putative, expressed -
16 Sobic.001G411100 expressed protein -
17 Sobic.004G154800 expressed protein -
18 Sobic.007G166300 PPDK(PubMedID : 19549309)@lactate/malate dehydrogenase family protein(PubMedID : 26465154)@NADP-malete dehydrogenase(PubMedID : 26904072)@-(PubMedID : 26976818)@"enzyme exhibits extensions at both the N- and C-termini, Chloroplast Enzyme"(PubMedID : 2373367)@lactate/malate dehydrogenase, putative, expressed K00051: malate dehydrogenase (NADP+)
19 Sobic.006G063900 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.009G123300 NAD dependent epimerase/dehydratase family protein, putative, expressed K06118: SQD1, UDP-sulfoquinovose synthase


Gene co-expression network
sample Sobic001G352200 Sobic001G352200 Sobic004G305900 Sobic004G305900 Sobic001G352200--Sobic004G305900 Sobic003G428600 Sobic003G428600 Sobic001G352200--Sobic003G428600 Sobic008G088821 Sobic008G088821 Sobic001G352200--Sobic008G088821 Sobic001G167900 Sobic001G167900 Sobic001G352200--Sobic001G167900 Sobic006G140500 Sobic006G140500 Sobic001G352200--Sobic006G140500 Sobic003G103300 Sobic003G103300 Sobic001G352200--Sobic003G103300 Sobic004G268400 Sobic004G268400 Sobic001G352200--Sobic004G268400 Sobic004G028300 Sobic004G028300 Sobic001G352200--Sobic004G028300 Sobic001G018000 Sobic001G018000 Sobic001G352200--Sobic001G018000 Sobic001G015200 Sobic001G015200 Sobic004G305900--Sobic001G015200 Sobic004G305900--Sobic008G088821 Sobic004G305900--Sobic003G103300 Sobic005G028800 Sobic005G028800 Sobic004G305900--Sobic005G028800 Sobic004G305900--Sobic006G140500 Sobic004G305900--Sobic001G167900 Sobic007G166300 Sobic007G166300 Sobic004G305900--Sobic007G166300 Sobic010G101000 Sobic010G101000 Sobic004G305900--Sobic010G101000 Sobic004G305900--Sobic004G028300 Sobic003G304300 Sobic003G304300 Sobic003G428600--Sobic003G304300 Sobic003G428600--Sobic010G101000 Sobic003G186800 Sobic003G186800 Sobic003G428600--Sobic003G186800 Sobic010G104700 Sobic010G104700 Sobic003G428600--Sobic010G104700 Sobic002G351200 Sobic002G351200 Sobic003G428600--Sobic002G351200 Sobic009G225600 Sobic009G225600 Sobic003G428600--Sobic009G225600 Sobic003G428600--Sobic001G018000 Sobic001G112900 Sobic001G112900 Sobic003G428600--Sobic001G112900 Sobic003G428600--Sobic004G268400 Sobic008G088821--Sobic001G015200 Sobic008G088821--Sobic006G140500 Sobic008G088821--Sobic004G028300 Sobic009G119300 Sobic009G119300 Sobic008G088821--Sobic009G119300 Sobic008G088821--Sobic003G103300 Sobic008G088821--Sobic001G018000 Sobic008G088821--Sobic004G268400 Sobic008G088821--Sobic010G101000 Sobic002G030900 Sobic002G030900 Sobic008G088821--Sobic002G030900 Sobic001G167900--Sobic004G028300 Sobic004G124400 Sobic004G124400 Sobic001G167900--Sobic004G124400 Sobic004G359600 Sobic004G359600 Sobic001G167900--Sobic004G359600 Sobic006G063900 Sobic006G063900 Sobic001G167900--Sobic006G063900 Sobic001G167900--Sobic001G015200 Sobic001G167900--Sobic008G088821 Sobic002G351600 Sobic002G351600 Sobic001G167900--Sobic002G351600 Sobic001G167900--Sobic007G166300 Sobic007G130400 Sobic007G130400 Sobic001G167900--Sobic007G130400 Sobic006G140500--Sobic008G088821 Sobic006G235350 Sobic006G235350 Sobic006G140500--Sobic006G235350 Sobic006G140500--Sobic001G015200 Sobic001G029600 Sobic001G029600 Sobic006G140500--Sobic001G029600 Sobic006G140500--Sobic009G119300 Sobic006G140500--Sobic004G028300 Sobic004G202200 Sobic004G202200 Sobic006G140500--Sobic004G202200 Sobic006G140500--Sobic005G028800 Sobic006G140500--Sobic007G166300 Sobic003G103300--Sobic001G015200 Sobic003G103300--Sobic008G088821 Sobic003G103300--Sobic004G268400 Sobic003G103300--Sobic010G101000 Sobic003G103300--Sobic001G018000 Sobic001G411100 Sobic001G411100 Sobic003G103300--Sobic001G411100 Sobic001G104700 Sobic001G104700 Sobic003G103300--Sobic001G104700 Sobic002G060800 Sobic002G060800 Sobic003G103300--Sobic002G060800 Sobic003G103300--Sobic002G351200 Sobic004G267700 Sobic004G267700 Sobic004G268400--Sobic004G267700 Sobic007G016600 Sobic007G016600 Sobic004G268400--Sobic007G016600 Sobic004G268400--Sobic001G018000 Sobic004G268400--Sobic002G351200 Sobic004G268400--Sobic003G304300 Sobic004G268400--Sobic003G186800 Sobic010G100900 Sobic010G100900 Sobic004G268400--Sobic010G100900 Sobic004G268400--Sobic010G101000 Sobic003G380200 Sobic003G380200 Sobic004G268400--Sobic003G380200 Sobic004G028300--Sobic008G088821 Sobic004G028300--Sobic001G167900 Sobic004G028300--Sobic006G140500 Sobic004G028300--Sobic006G063900 Sobic004G028300--Sobic001G015200 Sobic005G134100 Sobic005G134100 Sobic004G028300--Sobic005G134100 Sobic003G419900 Sobic003G419900 Sobic004G028300--Sobic003G419900 Sobic004G028300--Sobic004G359600 Sobic006G108200 Sobic006G108200 Sobic004G028300--Sobic006G108200 Sobic001G018000--Sobic004G268400 Sobic001G018000--Sobic002G351200 Sobic001G018000--Sobic007G016600 Sobic001G018000--Sobic010G101000 Sobic001G018000--Sobic004G267700 Sobic001G018000--Sobic001G411100 Sobic001G018000--Sobic002G030900 Sobic001G018000--Sobic003G304300 Sobic001G018000--Sobic003G186800
Octagon: transcription factors


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