Gene annotation
Transcriptome id Sobic.002G050900.3,Sobic.002G050900.2
Synonym Sb02g004260
Functional annotation uncharacterized protein At4g06744 precursor, putative, expressed
UniProt A0A1W0W2E3
Pfam PF08263 PF00560 PF13855
Panther DB PTHR32093
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G24480 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os07g07990.1 : uncharacterized protein At4g06744 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a016581 , Zm00025a034336 , Zm00025a037054 , Zm00025a045149 , Zm00025a054345 , Zm00025a016087
Brachypodium KQK17443 , PNT62583 , KQK20631 , KQJ93239
Barley HORVU6Hr1G016710.2 , HORVU6Hr1G016710.1 , HORVU5Hr1G105060.1 , HORVU5Hr1G105060.3 , HORVU5Hr1G105060.2 , HORVU3Hr1G021700.2 , HORVU3Hr1G021700.1
Wheat TraesCS3D02G119800 , TraesCS5D02G443700 , TraesCS5B02G439200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G050900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G156700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.005G075900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C1-like domain containing protein, expressed -
3 Sobic.009G204100 expressed protein -
4 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -
5 Sobic.001G138200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl transferase 8 domain containing protein, putative, expressed -
6 Sobic.003G416500 SRC2 protein, putative, expressed -
7 Sobic.001G100501 - -
8 Sobic.007G122500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
10 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
11 Sobic.006G274300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
12 Sobic.003G361100 hs1, putative, expressed -
13 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
14 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
15 Sobic.005G037000 cytochrome P450, putative, expressed -
16 Sobic.002G225700 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
17 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G187900 "Significantly enhanced the expression levels by drought stress, decreased markedly by silicon application"(PubMedID : 24813726)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
19 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
20 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic002G050900 Sobic002G050900 Sobic007G156700 Sobic007G156700 Sobic002G050900--Sobic007G156700 Sobic005G075900 Sobic005G075900 Sobic002G050900--Sobic005G075900 Sobic009G204100 Sobic009G204100 Sobic002G050900--Sobic009G204100 Sobic004G032300 Sobic004G032300 Sobic002G050900--Sobic004G032300 Sobic001G138200 Sobic001G138200 Sobic002G050900--Sobic001G138200 Sobic003G416500 Sobic003G416500 Sobic002G050900--Sobic003G416500 Sobic001G100501 Sobic001G100501 Sobic002G050900--Sobic001G100501 Sobic007G122500 Sobic007G122500 Sobic002G050900--Sobic007G122500 Sobic002G323900 Sobic002G323900 Sobic002G050900--Sobic002G323900 Sobic004G308900 Sobic004G308900 Sobic007G156700--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic007G156700--Sobic002G358300 Sobic007G122800 Sobic007G122800 Sobic007G156700--Sobic007G122800 Sobic003G323201 Sobic003G323201 Sobic007G156700--Sobic003G323201 Sobic002G269100 Sobic002G269100 Sobic007G156700--Sobic002G269100 Sobic004G169200 Sobic004G169200 Sobic007G156700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic007G156700--Sobic004G191400 Sobic004G246600 Sobic004G246600 Sobic007G156700--Sobic004G246600 Sobic001G195200 Sobic001G195200 Sobic007G156700--Sobic001G195200 Sobic010G099600 Sobic010G099600 Sobic005G075900--Sobic010G099600 Sobic005G075900--Sobic007G156700 Sobic001G437000 Sobic001G437000 Sobic005G075900--Sobic001G437000 Sobic002G245900 Sobic002G245900 Sobic005G075900--Sobic002G245900 Sobic001G219200 Sobic001G219200 Sobic005G075900--Sobic001G219200 Sobic002G278500 Sobic002G278500 Sobic005G075900--Sobic002G278500 Sobic005G122500 Sobic005G122500 Sobic005G075900--Sobic005G122500 Sobic002G140300 Sobic002G140300 Sobic005G075900--Sobic002G140300 Sobic001G440200 Sobic001G440200 Sobic005G075900--Sobic001G440200 Sobic001G077400 Sobic001G077400 Sobic009G204100--Sobic001G077400 Sobic005G037000 Sobic005G037000 Sobic009G204100--Sobic005G037000 Sobic003G361100 Sobic003G361100 Sobic009G204100--Sobic003G361100 Sobic010G209100 Sobic010G209100 Sobic009G204100--Sobic010G209100 Sobic006G165100 Sobic006G165100 Sobic009G204100--Sobic006G165100 Sobic001G441100 Sobic001G441100 Sobic009G204100--Sobic001G441100 Sobic004G280900 Sobic004G280900 Sobic009G204100--Sobic004G280900 Sobic001G035000 Sobic001G035000 Sobic009G204100--Sobic001G035000 Sobic003G324400 Sobic003G324400 Sobic009G204100--Sobic003G324400 Sobic010G234000 Sobic010G234000 Sobic004G032300--Sobic010G234000 Sobic004G032300--Sobic007G122500 Sobic004G032300--Sobic001G035000 Sobic006G274300 Sobic006G274300 Sobic004G032300--Sobic006G274300 Sobic006G273800 Sobic006G273800 Sobic004G032300--Sobic006G273800 Sobic004G032300--Sobic005G037000 Sobic004G032300--Sobic001G441100 Sobic009G217500 Sobic009G217500 Sobic004G032300--Sobic009G217500 Sobic009G217600 Sobic009G217600 Sobic004G032300--Sobic009G217600 Sobic001G138200--Sobic002G269100 Sobic001G138200--Sobic001G100501 Sobic002G388800 Sobic002G388800 Sobic001G138200--Sobic002G388800 Sobic002G225700 Sobic002G225700 Sobic001G138200--Sobic002G225700 Sobic001G138200--Sobic004G246600 Sobic001G295700 Sobic001G295700 Sobic001G138200--Sobic001G295700 Sobic004G097100 Sobic004G097100 Sobic001G138200--Sobic004G097100 Sobic003G207900 Sobic003G207900 Sobic001G138200--Sobic003G207900 Sobic001G143100 Sobic001G143100 Sobic001G138200--Sobic001G143100 Sobic001G489500 Sobic001G489500 Sobic003G416500--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic003G416500--Sobic010G023200 Sobic006G259000 Sobic006G259000 Sobic003G416500--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic001G100501--Sobic004G097100 Sobic001G100501--Sobic003G207900 Sobic003G230100 Sobic003G230100 Sobic001G100501--Sobic003G230100 Sobic001G100501--Sobic002G269100 Sobic006G216700 Sobic006G216700 Sobic001G100501--Sobic006G216700 Sobic001G100501--Sobic001G295700 Sobic001G100501--Sobic002G225700 Sobic009G136400 Sobic009G136400 Sobic001G100501--Sobic009G136400 Sobic001G100501--Sobic001G138200 Sobic007G122500--Sobic001G035000 Sobic007G122500--Sobic001G441100 Sobic007G122500--Sobic005G037000 Sobic007G122500--Sobic004G032300 Sobic007G122500--Sobic009G120800 Sobic007G122500--Sobic002G225700 Sobic007G126300 Sobic007G126300 Sobic007G122500--Sobic007G126300 Sobic006G187900 Sobic006G187900 Sobic007G122500--Sobic006G187900 Sobic007G122500--Sobic009G217600 Sobic002G323900--Sobic006G259000 Sobic002G323900--Sobic003G416500 Sobic002G323900--Sobic007G077100 Sobic002G323900--Sobic001G489500 Sobic002G323900--Sobic010G023200 Sobic004G086800 Sobic004G086800 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic001G064900 Sobic001G064900 Sobic002G323900--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic002G323900--Sobic009G010400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.