Gene annotation
| Transcriptome id | Sobic.002G055900.1 |
|---|---|
| Synonym | SHY2, auxin/indole-3-acetic acid (Aux/IAA), SbIAA5;AUX/IAA gene family;AUX/IAA gene family, IAA3, Sb02g004670 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123) Transcriptional repressor (PubMedID : 30367619) Negative regulator of ABA (PubMedID : 30367619) OsIAA24 - Auxin-responsive Aux/IAA gene family member, expressed |
| UniProt | C5XB42 |
| Pfam | PF02309 |
| Panther DB | PTHR31734 PTHR31734:SF8 |
| NCBI CDD | - |
| KEGG Orthology | K14484; auxin-responsive protein IAA |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus |
Orthologs (automatic annotation)
| TAIR | AT1G04240 : AUX/IAA transcriptional regulator family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g08460.1 : OsIAA24 - Auxin-responsive Aux/IAA gene family member, expressed |
| MaizeGDB (Corn) | Zm00025a045194 |
| Brachypodium | KQK12696 |
| Barley | HORVU5Hr1G106350.4 , HORVU5Hr1G106350.2 , HORVU5Hr1G106350.3 , HORVU5Hr1G106350.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G361100 | hs1, putative, expressed | - |
| 2 | Sobic.003G311200 | - | - |
| 3 | Sobic.003G317200 | vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed | K12184: ESCRT-I complex subunit VPS28 |
| 4 | Sobic.001G441600 | potyvirus VPg interacting protein, putative, expressed | - |
| 5 | Sobic.003G356700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.007G212200 | AN1-like zinc finger domain containing protein, expressed | - |
| 7 | Sobic.006G218700 | tyrosine protein kinase domain containing protein, putative, expressed | - |
| 8 | Sobic.009G204100 | expressed protein | - |
| 9 | Sobic.009G230700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 10 | Sobic.002G281700 | eukaryotic aspartyl protease domain containing protein, expressed | - |
| 11 | Sobic.009G065000 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 12 | Sobic.007G011000 | synaptobrevin-related family protein, putative, expressed | - |
| 13 | Sobic.002G119800 | arginyl-tRNA synthetase, putative, expressed | - |
| 14 | Sobic.001G138300 | zinc finger, C3HC4 type domain containing protein, expressed | K10666: E3 ubiquitin-protein ligase RNF5 |
| 15 | Sobic.004G229300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed | - |
| 16 | Sobic.001G420700 | clathrin assembly protein, putative, expressed | - |
| 17 | Sobic.003G116700 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 18 | Sobic.002G377000 | EF hand family protein, expressed | - |
| 19 | Sobic.009G134600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed | K14493: gibberellin receptor GID1 |
| 20 | Sobic.002G270700 | OsRhmbd16 - Putative Rhomboid homologue, expressed | - |
Gene co-expression network
Octagon: transcription factors
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