Gene annotation
Transcriptome id Sobic.002G081900.1
Synonym Sb02g006850
Functional annotation GIY-YIG catalytic domain containing protein, putative, expressed
UniProt C5XDH1
Pfam PF01541
Panther DB PTHR20208 PTHR20208:SF10
NCBI CDD -
KEGG Orthology K15078; structure-specific endonuclease subunit SLX1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30350 : Excinuclease ABC, C subunit, N-terminal
RAP-DB (Rice) LOC_Os07g12710.1 : GIY-YIG catalytic domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045441
Brachypodium PNT76802 , KQK20309
Barley HORVU4Hr1G017210.7 , HORVU4Hr1G017210.6 , HORVU4Hr1G017210.5 , HORVU4Hr1G017210.4 , HORVU4Hr1G017210.2 , HORVU4Hr1G017210.9 , HORVU4Hr1G017210.8 , HORVU6Hr1G068820.4 , HORVU6Hr1G068820.5 , HORVU6Hr1G068820.6 , HORVU6Hr1G068820.7 , HORVU6Hr1G068820.1 , HORVU6Hr1G068820.2 , HORVU6Hr1G068820.3 , HORVU6Hr1G068820.8 , HORVU6Hr1G068820.9 , HORVU4Hr1G017210.10 , HORVU6Hr1G068820.16 , HORVU6Hr1G068820.17 , HORVU6Hr1G068820.14 , HORVU6Hr1G068820.15 , HORVU6Hr1G068820.12 , HORVU6Hr1G068820.13 , HORVU6Hr1G068820.10 , HORVU6Hr1G068820.11
Wheat TraesCS6A02G272500 , TraesCS6A02G272500 , TraesCS6B02G300000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
2 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
3 Sobic.001G276100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
4 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
5 Sobic.002G226100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G137800 expressed protein -
7 Sobic.007G132500 F-box domain containing protein, expressed -
8 Sobic.003G135800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
9 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
10 Sobic.009G000900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase
11 Sobic.010G186400 Tetratricopeptide repeat (TPR)-like superfamily protein(PubMedID : 26465154)@expressed protein -
12 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
13 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
14 Sobic.010G231100 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
15 Sobic.001G416300 expressed protein -
16 Sobic.006G052200 nodulin, putative, expressed -
17 Sobic.003G381300 expressed protein -
18 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
19 Sobic.004G164200 heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
20 Sobic.006G201100 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic002G081900 Sobic002G081900 Sobic003G208300 Sobic003G208300 Sobic002G081900--Sobic003G208300 Sobic001G161300 Sobic001G161300 Sobic002G081900--Sobic001G161300 Sobic001G276100 Sobic001G276100 Sobic002G081900--Sobic001G276100 Sobic001G179100 Sobic001G179100 Sobic002G081900--Sobic001G179100 Sobic002G226100 Sobic002G226100 Sobic002G081900--Sobic002G226100 Sobic008G137800 Sobic008G137800 Sobic002G081900--Sobic008G137800 Sobic007G132500 Sobic007G132500 Sobic002G081900--Sobic007G132500 Sobic003G135800 Sobic003G135800 Sobic002G081900--Sobic003G135800 Sobic002G386400 Sobic002G386400 Sobic002G081900--Sobic002G386400 Sobic003G208300--Sobic002G386400 Sobic003G208300--Sobic007G132500 Sobic002G038300 Sobic002G038300 Sobic003G208300--Sobic002G038300 Sobic002G163700 Sobic002G163700 Sobic003G208300--Sobic002G163700 Sobic009G004800 Sobic009G004800 Sobic003G208300--Sobic009G004800 Sobic006G197700 Sobic006G197700 Sobic003G208300--Sobic006G197700 Sobic003G208300--Sobic001G161300 Sobic006G214700 Sobic006G214700 Sobic003G208300--Sobic006G214700 Sobic003G330100 Sobic003G330100 Sobic003G208300--Sobic003G330100 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic004G068700 Sobic004G068700 Sobic001G161300--Sobic004G068700 Sobic001G161300--Sobic001G276100 Sobic001G161300--Sobic002G226100 Sobic002G384400 Sobic002G384400 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic001G276100--Sobic001G161300 Sobic001G276100--Sobic009G000900 Sobic001G276100--Sobic004G007500 Sobic001G276100--Sobic002G226100 Sobic009G197300 Sobic009G197300 Sobic001G276100--Sobic009G197300 Sobic003G355800 Sobic003G355800 Sobic001G276100--Sobic003G355800 Sobic003G214000 Sobic003G214000 Sobic001G276100--Sobic003G214000 Sobic006G052200 Sobic006G052200 Sobic001G276100--Sobic006G052200 Sobic001G276100--Sobic002G384400 Sobic001G179100--Sobic004G068700 Sobic001G179100--Sobic003G214000 Sobic002G155900 Sobic002G155900 Sobic001G179100--Sobic002G155900 Sobic002G287000 Sobic002G287000 Sobic001G179100--Sobic002G287000 Sobic009G238100 Sobic009G238100 Sobic001G179100--Sobic009G238100 Sobic003G255100 Sobic003G255100 Sobic001G179100--Sobic003G255100 Sobic001G179100--Sobic001G161300 Sobic008G111300 Sobic008G111300 Sobic001G179100--Sobic008G111300 Sobic002G366100 Sobic002G366100 Sobic001G179100--Sobic002G366100 Sobic002G226100--Sobic001G161300 Sobic002G226100--Sobic004G068700 Sobic002G226100--Sobic002G386400 Sobic002G226100--Sobic002G384400 Sobic002G226100--Sobic001G276100 Sobic001G416300 Sobic001G416300 Sobic002G226100--Sobic001G416300 Sobic002G226100--Sobic001G179100 Sobic002G226100--Sobic006G197700 Sobic002G226100--Sobic008G111300 Sobic008G137800--Sobic003G214000 Sobic004G078600 Sobic004G078600 Sobic008G137800--Sobic004G078600 Sobic001G145050 Sobic001G145050 Sobic008G137800--Sobic001G145050 Sobic008G137800--Sobic001G179100 Sobic001G315800 Sobic001G315800 Sobic008G137800--Sobic001G315800 Sobic009G152400 Sobic009G152400 Sobic008G137800--Sobic009G152400 Sobic003G402200 Sobic003G402200 Sobic008G137800--Sobic003G402200 Sobic008G137800--Sobic004G068700 Sobic006G060800 Sobic006G060800 Sobic008G137800--Sobic006G060800 Sobic007G132500--Sobic006G197700 Sobic005G021600 Sobic005G021600 Sobic007G132500--Sobic005G021600 Sobic006G111600 Sobic006G111600 Sobic007G132500--Sobic006G111600 Sobic007G132500--Sobic003G208300 Sobic008G063100 Sobic008G063100 Sobic007G132500--Sobic008G063100 Sobic001G006000 Sobic001G006000 Sobic007G132500--Sobic001G006000 Sobic009G028400 Sobic009G028400 Sobic007G132500--Sobic009G028400 Sobic006G110900 Sobic006G110900 Sobic007G132500--Sobic006G110900 Sobic008G063200 Sobic008G063200 Sobic007G132500--Sobic008G063200 Sobic005G190900 Sobic005G190900 Sobic003G135800--Sobic005G190900 Sobic003G135800--Sobic004G078600 Sobic002G371900 Sobic002G371900 Sobic003G135800--Sobic002G371900 Sobic001G019300 Sobic001G019300 Sobic003G135800--Sobic001G019300 Sobic002G281000 Sobic002G281000 Sobic003G135800--Sobic002G281000 Sobic005G089000 Sobic005G089000 Sobic003G135800--Sobic005G089000 Sobic003G096500 Sobic003G096500 Sobic003G135800--Sobic003G096500 Sobic002G265400 Sobic002G265400 Sobic003G135800--Sobic002G265400 Sobic004G063200 Sobic004G063200 Sobic003G135800--Sobic004G063200 Sobic002G386400--Sobic002G038300 Sobic002G386400--Sobic003G208300 Sobic002G386400--Sobic006G197700 Sobic002G386400--Sobic001G161300 Sobic002G386400--Sobic002G163700 Sobic002G386400--Sobic003G330100 Sobic010G028000 Sobic010G028000 Sobic002G386400--Sobic010G028000 Sobic009G234200 Sobic009G234200 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400
Octagon: transcription factors


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