Gene annotation
Transcriptome id Sobic.002G094800.1
Synonym Sb02g007820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1W0W314
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os07g14910.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G233300 Cupredoxin superfamily protein(PubMedID : 26465154)@plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G309700 decarboxylase, putative, expressed K01592: tyrosine decarboxylase
3 Sobic.003G234400 CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed K01673: cynT, carbonic anhydrase
4 Sobic.010G095000 kinase, pfkB family, putative, expressed K00847: E2.7.1.4, fructokinase
5 Sobic.006G017200 Leucine Rich Repeat family protein, expressed -
6 Sobic.003G231800 down-regulated TF in developmental senescence(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
7 Sobic.002G214300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
9 Sobic.002G264800 unknown(PubMedID : 29017446)@expressed protein -
10 Sobic.006G008700 bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase
11 Sobic.010G038500 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.002G329400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@beta-amylase, putative, expressed -
13 Sobic.003G036100 - -
14 Sobic.004G353700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G235500 expressed protein -
16 Sobic.001G406000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.13 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.003G199800 expressed protein -
18 Sobic.003G237600 expressed protein -
19 Sobic.010G276400 "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
20 Sobic.009G244600 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic002G094800 Sobic002G094800 Sobic002G233300 Sobic002G233300 Sobic002G094800--Sobic002G233300 Sobic003G309700 Sobic003G309700 Sobic002G094800--Sobic003G309700 Sobic003G234400 Sobic003G234400 Sobic002G094800--Sobic003G234400 Sobic010G095000 Sobic010G095000 Sobic002G094800--Sobic010G095000 Sobic006G017200 Sobic006G017200 Sobic002G094800--Sobic006G017200 Sobic003G231800 Sobic003G231800 Sobic002G094800--Sobic003G231800 Sobic002G214300 Sobic002G214300 Sobic002G094800--Sobic002G214300 Sobic004G026300 Sobic004G026300 Sobic002G094800--Sobic004G026300 Sobic002G264800 Sobic002G264800 Sobic002G094800--Sobic002G264800 Sobic010G038500 Sobic010G038500 Sobic002G233300--Sobic010G038500 Sobic003G199800 Sobic003G199800 Sobic002G233300--Sobic003G199800 Sobic002G040100 Sobic002G040100 Sobic002G233300--Sobic002G040100 Sobic001G344600 Sobic001G344600 Sobic002G233300--Sobic001G344600 Sobic009G191300 Sobic009G191300 Sobic002G233300--Sobic009G191300 Sobic007G034300 Sobic007G034300 Sobic002G233300--Sobic007G034300 Sobic001G338700 Sobic001G338700 Sobic002G233300--Sobic001G338700 Sobic001G520800 Sobic001G520800 Sobic002G233300--Sobic001G520800 Sobic008G038300 Sobic008G038300 Sobic002G233300--Sobic008G038300 Sobic004G023400 Sobic004G023400 Sobic003G309700--Sobic004G023400 Sobic003G309700--Sobic009G191300 Sobic006G136500 Sobic006G136500 Sobic003G309700--Sobic006G136500 Sobic003G264700 Sobic003G264700 Sobic003G309700--Sobic003G264700 Sobic010G006350 Sobic010G006350 Sobic003G309700--Sobic010G006350 Sobic001G364100 Sobic001G364100 Sobic003G309700--Sobic001G364100 Sobic001G417200 Sobic001G417200 Sobic003G309700--Sobic001G417200 Sobic003G309700--Sobic002G094800 Sobic006G162200 Sobic006G162200 Sobic003G309700--Sobic006G162200 Sobic006G008700 Sobic006G008700 Sobic003G234400--Sobic006G008700 Sobic003G234400--Sobic010G095000 Sobic003G303700 Sobic003G303700 Sobic003G234400--Sobic003G303700 Sobic008G021300 Sobic008G021300 Sobic003G234400--Sobic008G021300 Sobic004G353700 Sobic004G353700 Sobic003G234400--Sobic004G353700 Sobic008G061401 Sobic008G061401 Sobic003G234400--Sobic008G061401 Sobic001G076900 Sobic001G076900 Sobic003G234400--Sobic001G076900 Sobic003G234400--Sobic004G026300 Sobic010G201700 Sobic010G201700 Sobic003G234400--Sobic010G201700 Sobic010G095000--Sobic001G076900 Sobic010G095000--Sobic003G234400 Sobic010G095000--Sobic006G008700 Sobic005G056400 Sobic005G056400 Sobic010G095000--Sobic005G056400 Sobic010G153900 Sobic010G153900 Sobic010G095000--Sobic010G153900 Sobic004G305800 Sobic004G305800 Sobic010G095000--Sobic004G305800 Sobic010G095000--Sobic010G201700 Sobic004G125700 Sobic004G125700 Sobic010G095000--Sobic004G125700 Sobic005G200200 Sobic005G200200 Sobic010G095000--Sobic005G200200 Sobic003G069100 Sobic003G069100 Sobic006G017200--Sobic003G069100 Sobic010G276400 Sobic010G276400 Sobic006G017200--Sobic010G276400 Sobic006G017200--Sobic004G026300 Sobic006G017200--Sobic003G199800 Sobic006G017200--Sobic003G234400 Sobic007G171600 Sobic007G171600 Sobic006G017200--Sobic007G171600 Sobic010G019700 Sobic010G019700 Sobic006G017200--Sobic010G019700 Sobic006G017200--Sobic010G095000 Sobic006G017200--Sobic002G233300 Sobic009G244300 Sobic009G244300 Sobic003G231800--Sobic009G244300 Sobic009G244600 Sobic009G244600 Sobic003G231800--Sobic009G244600 Sobic004G267000 Sobic004G267000 Sobic003G231800--Sobic004G267000 Sobic010G183100 Sobic010G183100 Sobic003G231800--Sobic010G183100 Sobic003G231800--Sobic007G034300 Sobic003G231800--Sobic001G520800 Sobic006G006700 Sobic006G006700 Sobic003G231800--Sobic006G006700 Sobic009G254600 Sobic009G254600 Sobic003G231800--Sobic009G254600 Sobic003G235500 Sobic003G235500 Sobic003G231800--Sobic003G235500 Sobic002G214300--Sobic004G353700 Sobic001G406000 Sobic001G406000 Sobic002G214300--Sobic001G406000 Sobic002G214300--Sobic003G234400 Sobic007G189700 Sobic007G189700 Sobic002G214300--Sobic007G189700 Sobic003G237600 Sobic003G237600 Sobic002G214300--Sobic003G237600 Sobic002G214300--Sobic003G231800 Sobic003G036100 Sobic003G036100 Sobic002G214300--Sobic003G036100 Sobic001G189100 Sobic001G189100 Sobic002G214300--Sobic001G189100 Sobic003G131000 Sobic003G131000 Sobic004G026300--Sobic003G131000 Sobic004G026300--Sobic010G276400 Sobic004G026300--Sobic003G199800 Sobic004G026300--Sobic003G234400 Sobic004G026300--Sobic010G038500 Sobic001G111700 Sobic001G111700 Sobic004G026300--Sobic001G111700 Sobic001G068400 Sobic001G068400 Sobic004G026300--Sobic001G068400 Sobic004G026300--Sobic002G040100 Sobic004G026300--Sobic003G069100 Sobic007G212400 Sobic007G212400 Sobic002G264800--Sobic007G212400 Sobic002G264800--Sobic001G364100 Sobic001G382100 Sobic001G382100 Sobic002G264800--Sobic001G382100 Sobic001G448400 Sobic001G448400 Sobic002G264800--Sobic001G448400 Sobic009G091850 Sobic009G091850 Sobic002G264800--Sobic009G091850 Sobic002G339200 Sobic002G339200 Sobic002G264800--Sobic002G339200 Sobic003G099400 Sobic003G099400 Sobic002G264800--Sobic003G099400 Sobic002G329600 Sobic002G329600 Sobic002G264800--Sobic002G329600 Sobic006G234100 Sobic006G234100 Sobic002G264800--Sobic006G234100
Octagon: transcription factors


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