Gene annotation
Transcriptome id Sobic.002G189900.1
Synonym Sb02g023740
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XBG6
Pfam PF14009
Panther DB PTHR33413 PTHR33413:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60010 : -
RAP-DB (Rice) LOC_Os09g21380.1 : expressed protein
MaizeGDB (Corn) Zm00025a046838
Brachypodium KQJ90107
Barley HORVU5Hr1G059690.1 , HORVU5Hr1G059690.2 , HORVU5Hr1G059690.3 , HORVU5Hr1G059690.4 , HORVU5Hr1G059690.5 , HORVU5Hr1G059690.6 , HORVU5Hr1G059690.7 , HORVU5Hr1G059690.8 , HORVU5Hr1G059690.9 , HORVU5Hr1G059690.10
Wheat TraesCS5B02G198500 , TraesCS5D02G205700 , TraesCS5A02G200100 , TraesCS5B02G198400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G321100 expressed protein -
2 Sobic.006G262900 expressed protein -
3 Sobic.003G327100 zinc finger, C3HC4 type domain containing protein, expressed K11982: E3 ubiquitin-protein ligase RNF115/126
4 Sobic.009G249900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed K14506: jasmonic acid-amino synthetase
5 Sobic.002G427700 expressed protein -
6 Sobic.004G352500 vacuolar ATP synthase subunit F, putative, expressed K02151: ATPeV1F, V-type H+-transporting ATPase subunit F
7 Sobic.004G179700 expressed protein -
8 Sobic.003G370500 hydrolase, alpha/beta fold family domain containing protein, expressed K07019: uncharacterized protein
9 Sobic.002G288200 expressed protein -
10 Sobic.003G279200 ubiquinone oxidoreductase, putative, expressed K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7
11 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
12 Sobic.001G479200 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
13 Sobic.002G016300 MYB family transcription factor, putative, expressed -
14 Sobic.004G298500 cyclin, putative, expressed -
15 Sobic.005G055000 expressed protein K02155: ATPeV0C, V-type H+-transporting ATPase 16kDa proteolipid subunit
16 Sobic.007G061400 heat shock protein DnaJ, putative, expressed K09539: DnaJ homolog subfamily C member 19
17 Sobic.002G166400 integral membrane family protein, putative, expressed -
18 Sobic.002G330500 hydrolase, NUDIX family, domain containing protein, expressed K01823: idi, isopentenyl-diphosphate Delta-isomerase
19 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
20 Sobic.001G489700 prenyltransferase, putative, expressed K02257: COX10, ctaB, heme o synthase


Gene co-expression network
sample Sobic002G189900 Sobic002G189900 Sobic001G321100 Sobic001G321100 Sobic002G189900--Sobic001G321100 Sobic006G262900 Sobic006G262900 Sobic002G189900--Sobic006G262900 Sobic003G327100 Sobic003G327100 Sobic002G189900--Sobic003G327100 Sobic009G249900 Sobic009G249900 Sobic002G189900--Sobic009G249900 Sobic002G427700 Sobic002G427700 Sobic002G189900--Sobic002G427700 Sobic004G352500 Sobic004G352500 Sobic002G189900--Sobic004G352500 Sobic004G179700 Sobic004G179700 Sobic002G189900--Sobic004G179700 Sobic003G370500 Sobic003G370500 Sobic002G189900--Sobic003G370500 Sobic002G288200 Sobic002G288200 Sobic002G189900--Sobic002G288200 Sobic006G279900 Sobic006G279900 Sobic001G321100--Sobic006G279900 Sobic004G357800 Sobic004G357800 Sobic001G321100--Sobic004G357800 Sobic003G211700 Sobic003G211700 Sobic001G321100--Sobic003G211700 Sobic007G003600 Sobic007G003600 Sobic001G321100--Sobic007G003600 Sobic006G252400 Sobic006G252400 Sobic001G321100--Sobic006G252400 Sobic004G164000 Sobic004G164000 Sobic001G321100--Sobic004G164000 Sobic004G016100 Sobic004G016100 Sobic001G321100--Sobic004G016100 Sobic003G346100 Sobic003G346100 Sobic001G321100--Sobic003G346100 Sobic003G137400 Sobic003G137400 Sobic001G321100--Sobic003G137400 Sobic009G198500 Sobic009G198500 Sobic006G262900--Sobic009G198500 Sobic003G124800 Sobic003G124800 Sobic006G262900--Sobic003G124800 Sobic006G263900 Sobic006G263900 Sobic006G262900--Sobic006G263900 Sobic001G136900 Sobic001G136900 Sobic006G262900--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic006G262900--Sobic001G054200 Sobic010G083700 Sobic010G083700 Sobic006G262900--Sobic010G083700 Sobic001G129300 Sobic001G129300 Sobic006G262900--Sobic001G129300 Sobic007G203700 Sobic007G203700 Sobic006G262900--Sobic007G203700 Sobic007G079700 Sobic007G079700 Sobic006G262900--Sobic007G079700 Sobic003G327100--Sobic006G262900 Sobic001G138300 Sobic001G138300 Sobic003G327100--Sobic001G138300 Sobic009G101400 Sobic009G101400 Sobic003G327100--Sobic009G101400 Sobic003G048500 Sobic003G048500 Sobic003G327100--Sobic003G048500 Sobic001G530500 Sobic001G530500 Sobic003G327100--Sobic001G530500 Sobic010G092300 Sobic010G092300 Sobic003G327100--Sobic010G092300 Sobic006G198500 Sobic006G198500 Sobic003G327100--Sobic006G198500 Sobic001G208300 Sobic001G208300 Sobic003G327100--Sobic001G208300 Sobic001G294200 Sobic001G294200 Sobic003G327100--Sobic001G294200 Sobic002G401100 Sobic002G401100 Sobic009G249900--Sobic002G401100 Sobic002G204600 Sobic002G204600 Sobic009G249900--Sobic002G204600 Sobic003G345400 Sobic003G345400 Sobic009G249900--Sobic003G345400 Sobic001G048100 Sobic001G048100 Sobic009G249900--Sobic001G048100 Sobic009G249900--Sobic003G048500 Sobic007G171400 Sobic007G171400 Sobic009G249900--Sobic007G171400 Sobic002G054300 Sobic002G054300 Sobic009G249900--Sobic002G054300 Sobic007G150100 Sobic007G150100 Sobic009G249900--Sobic007G150100 Sobic010G184100 Sobic010G184100 Sobic009G249900--Sobic010G184100 Sobic010G197900 Sobic010G197900 Sobic002G427700--Sobic010G197900 Sobic002G427700--Sobic006G262900 Sobic003G116600 Sobic003G116600 Sobic002G427700--Sobic003G116600 Sobic003G374000 Sobic003G374000 Sobic002G427700--Sobic003G374000 Sobic002G306400 Sobic002G306400 Sobic002G427700--Sobic002G306400 Sobic001G294900 Sobic001G294900 Sobic002G427700--Sobic001G294900 Sobic008G137600 Sobic008G137600 Sobic002G427700--Sobic008G137600 Sobic006G109700 Sobic006G109700 Sobic002G427700--Sobic006G109700 Sobic007G014900 Sobic007G014900 Sobic002G427700--Sobic007G014900 Sobic003G001200 Sobic003G001200 Sobic004G352500--Sobic003G001200 Sobic005G111900 Sobic005G111900 Sobic004G352500--Sobic005G111900 Sobic004G352500--Sobic003G370500 Sobic007G061400 Sobic007G061400 Sobic004G352500--Sobic007G061400 Sobic007G071300 Sobic007G071300 Sobic004G352500--Sobic007G071300 Sobic004G297700 Sobic004G297700 Sobic004G352500--Sobic004G297700 Sobic002G355300 Sobic002G355300 Sobic004G352500--Sobic002G355300 Sobic001G282500 Sobic001G282500 Sobic004G352500--Sobic001G282500 Sobic001G391200 Sobic001G391200 Sobic004G352500--Sobic001G391200 Sobic009G131100 Sobic009G131100 Sobic004G179700--Sobic009G131100 Sobic004G179700--Sobic007G079700 Sobic001G206000 Sobic001G206000 Sobic004G179700--Sobic001G206000 Sobic001G285000 Sobic001G285000 Sobic004G179700--Sobic001G285000 Sobic004G179700--Sobic006G262900 Sobic001G225600 Sobic001G225600 Sobic004G179700--Sobic001G225600 Sobic009G199700 Sobic009G199700 Sobic004G179700--Sobic009G199700 Sobic002G335400 Sobic002G335400 Sobic004G179700--Sobic002G335400 Sobic003G277000 Sobic003G277000 Sobic004G179700--Sobic003G277000 Sobic002G047500 Sobic002G047500 Sobic003G370500--Sobic002G047500 Sobic004G054100 Sobic004G054100 Sobic003G370500--Sobic004G054100 Sobic003G370500--Sobic004G352500 Sobic007G005300 Sobic007G005300 Sobic003G370500--Sobic007G005300 Sobic006G274800 Sobic006G274800 Sobic003G370500--Sobic006G274800 Sobic008G048300 Sobic008G048300 Sobic003G370500--Sobic008G048300 Sobic002G376600 Sobic002G376600 Sobic003G370500--Sobic002G376600 Sobic002G181600 Sobic002G181600 Sobic003G370500--Sobic002G181600 Sobic001G031100 Sobic001G031100 Sobic003G370500--Sobic001G031100 Sobic002G288200--Sobic007G005300 Sobic002G288200--Sobic003G048500 Sobic006G212100 Sobic006G212100 Sobic002G288200--Sobic006G212100 Sobic003G212500 Sobic003G212500 Sobic002G288200--Sobic003G212500 Sobic002G288200--Sobic002G047500 Sobic002G288200--Sobic001G294900 Sobic001G112400 Sobic001G112400 Sobic002G288200--Sobic001G112400 Sobic001G512400 Sobic001G512400 Sobic002G288200--Sobic001G512400 Sobic002G194100 Sobic002G194100 Sobic002G288200--Sobic002G194100
Octagon: transcription factors


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