Gene annotation
| Transcriptome id | Sobic.002G271200.1 |
|---|---|
| Synonym | UGE1, ATUGE1, Sb02g030500 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543) UDP-glucose 4-epimerase, putative, expressed |
| UniProt | A0A1B6QDQ0 |
| Pfam | PF01073 |
| Panther DB | PTHR10366 PTHR10366:SF331 |
| NCBI CDD | - |
| KEGG Orthology | K01784; galE, UDP-glucose 4-epimerase |
| Gene Ontology | GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity |
Orthologs (automatic annotation)
| TAIR | AT1G12780 : UDP-D-glucose/UDP-D-galactose 4-epimerase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os09g35800.1 : UDP-glucose 4-epimerase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047734 |
| Brachypodium | KQJ89839 , KQJ91135 |
| Barley | HORVU5Hr1G080860.11 , HORVU5Hr1G080860.10 , HORVU5Hr1G080860.13 , HORVU5Hr1G080860.12 , HORVU5Hr1G080860.15 , HORVU5Hr1G080860.14 , HORVU5Hr1G080860.17 , HORVU5Hr1G080860.16 , HORVU5Hr1G080860.19 , HORVU5Hr1G080860.18 , HORVU5Hr1G080860.5 , HORVU5Hr1G080860.4 , HORVU5Hr1G080860.7 , HORVU5Hr1G080860.6 , HORVU5Hr1G080860.1 , HORVU5Hr1G080860.3 , HORVU5Hr1G080860.2 , HORVU5Hr1G080860.9 , HORVU5Hr1G080860.8 , HORVU5Hr1G055920.6 , HORVU5Hr1G055920.7 , HORVU5Hr1G055920.4 , HORVU5Hr1G055920.5 , HORVU5Hr1G055920.2 , HORVU5Hr1G055920.3 , HORVU5Hr1G055920.1 , HORVU5Hr1G055920.8 , HORVU6Hr1G027310.1 , HORVU7Hr1G117810.1 |
| Wheat | TraesCS5A02G183100 , TraesCS5B02G315700 , TraesCS5D02G188200 , TraesCS5D02G321100 , TraesCS5B02G181300 , TraesCS5A02G314800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G282500 | phospholipase D, putative, expressed | K01115: phospholipase D1/2 |
| 2 | Sobic.003G381600 | ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed | K03544: clpX, ATP-dependent Clp protease ATP-binding subunit ClpX |
| 3 | Sobic.002G093300 | hydrolase, putative, expressed | K14664: IAA-amino acid hydrolase |
| 4 | Sobic.004G236800 | MAG2, putative, expressed | - |
| 5 | Sobic.004G037900 | GHMP kinases ATP-binding protein, putative, expressed | K12446: L-arabinokinase |
| 6 | Sobic.001G130200 | DUF1336 domain containing protein, expressed | - |
| 7 | Sobic.009G260650 | - | - |
| 8 | Sobic.006G211500 | "GA biosynthetic gene, causes dwarfism accompanied by unusual culm bending in the mutants"(PubMedID : 24924234)@ent-kaurene synthase, chloroplast precursor, putative, expressed | K04121: ent-kaurene synthase |
| 9 | Sobic.003G393200 | expressed protein | - |
| 10 | Sobic.003G196400 | Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed | K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit |
| 11 | Sobic.005G163100 | dnaJ domain containing protein, expressed | - |
| 12 | Sobic.010G203100 | - | - |
| 13 | Sobic.009G059400 | expressed protein | - |
| 14 | Sobic.009G173100 | Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.24 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
| 15 | Sobic.002G056900 | targeting protein for Xklp2, putative, expressed | - |
| 16 | Sobic.001G527700 | CAMK_CAMK_like_ULKh_APGy.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | K08269: ULK2, serine/threonine-protein kinase ULK2 |
| 17 | Sobic.002G264600 | GRAM domain containing protein, expressed | - |
| 18 | Sobic.005G194000 | DUF1399 containing protein, putative, expressed | - |
| 19 | Sobic.009G039800 | expressed protein | - |
| 20 | Sobic.005G225400 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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