Gene annotation
| Transcriptome id | Sobic.002G285700.1 |
|---|---|
| Synonym | Sb02g031810, small auxin up RNA, SbSAUR24 |
| Functional annotation | "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123) OsSAUR55 - Auxin-responsive SAUR gene family member, expressed |
| UniProt | A0A1B6QDX1 |
| Pfam | PF02519 |
| Panther DB | PTHR31175 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT1G29500 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os09g37500.1 : OsSAUR55 - Auxin-responsive SAUR gene family member, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G015100 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed | K14487: auxin responsive GH3 gene family |
| 2 | Sobic.006G103400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 3 | Sobic.001G536800 | peptidyl-prolyl cis-trans isomerase, putative, expressed | K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B) |
| 4 | Sobic.009G085500 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 5 | Sobic.008G066100 | 3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed | - |
| 6 | Sobic.002G316700 | ATP synthase subunit gamma(PubMedID : 26186930)@ATP synthase subunit gamma (Zm)(PubMedID : 27208977)@ATP synthase gamma chain, putative, expressed | K02115: ATPF1G, F-type H+-transporting ATPase subunit gamma |
| 7 | Sobic.002G030500 | Reticulon family protein(PubMedID : 26465154)@reticulon domain containing protein, putative, expressed | - |
| 8 | Sobic.010G189300 | Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed | K08909: light-harvesting complex I chlorophyll a/b binding protein 3 |
| 9 | Sobic.008G101400 | - | - |
| 10 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 11 | Sobic.001G070500 | Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed | K02694: photosystem I subunit III |
| 12 | Sobic.007G207800 | thylakoid lumen protein, chloroplast precursor, putative, expressed | - |
| 13 | Sobic.007G136900 | Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08910: light-harvesting complex I chlorophyll a/b binding protein 4 |
| 14 | Sobic.003G209900 | Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 15 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 16 | Sobic.004G235200 | ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed | K02113: ATPF1D, F-type H+-transporting ATPase subunit delta |
| 17 | Sobic.004G272600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed | - |
| 18 | Sobic.002G033800 | expressed protein | - |
| 19 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 20 | Sobic.004G175500 | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed | K00434: L-ascorbate peroxidase |
Gene co-expression network
Octagon: transcription factors
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