Gene annotation
Transcriptome id Sobic.002G287750.1
Synonym -
Functional annotation -
UniProt A0A1W0W653
Pfam PF00861
Panther DB PTHR12899:SF4 PTHR12899
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003735; structural constituent of ribosome GO:0005622intracellular GO:0005840ribosome GO:0006412translation


Orthologs (automatic annotation)
TAIR AT3G45020 : Ribosomal L18p/L5e family protein
RAP-DB (Rice) LOC_Os09g37740.1 : ribosomal L18p/L5e family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047964
Brachypodium KQJ91362
Barley HORVU5Hr1G086960.2 , HORVU5Hr1G086960.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
2 Sobic.001G132900 expressed protein -
3 Sobic.001G129400 ribosomal protein-related, putative, expressed K02970: RP-S21, MRPS21, small subunit ribosomal protein S21
4 Sobic.003G016400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G008800 expressed protein -
6 Sobic.002G428900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MRH1, putative, expressed -
7 Sobic.004G018400 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
8 Sobic.003G122100 FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
9 Sobic.010G018000 39S ribosomal protein L47, mitochondrial precursor, putative, expressed K17428: MRPL47, large subunit ribosomal protein L47
10 Sobic.003G182400 DNA-damage-repair/toleration protein DRT102, putative, expressed -
11 Sobic.008G008300 expressed protein -
12 Sobic.010G094800 pro-resilin precursor, putative, expressed -
13 Sobic.001G513600 C-methyltransferase, putative, expressed K08242: 24-methylenesterol C-methyltransferase
14 Sobic.003G326900 expressed protein -
15 Sobic.010G194200 expressed protein -
16 Sobic.010G001800 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
17 Sobic.005G110526 - -
18 Sobic.008G107900 glycine-rich protein, putative, expressed -
19 Sobic.004G117800 Ser/Thr protein phosphatase family protein, putative, expressed K18467: vacuolar protein sorting-associated protein 29
20 Sobic.004G184000 SFT2, putative, expressed -


Gene co-expression network
sample Sobic002G287750 Sobic002G287750 Sobic003G003000 Sobic003G003000 Sobic002G287750--Sobic003G003000 Sobic001G132900 Sobic001G132900 Sobic002G287750--Sobic001G132900 Sobic001G129400 Sobic001G129400 Sobic002G287750--Sobic001G129400 Sobic003G016400 Sobic003G016400 Sobic002G287750--Sobic003G016400 Sobic001G008800 Sobic001G008800 Sobic002G287750--Sobic001G008800 Sobic002G428900 Sobic002G428900 Sobic002G287750--Sobic002G428900 Sobic004G018400 Sobic004G018400 Sobic002G287750--Sobic004G018400 Sobic003G122100 Sobic003G122100 Sobic002G287750--Sobic003G122100 Sobic010G018000 Sobic010G018000 Sobic002G287750--Sobic010G018000 Sobic003G003000--Sobic001G129400 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic003G003000--Sobic010G018000 Sobic003G003000--Sobic001G008800 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic001G132900--Sobic003G003000 Sobic001G132900--Sobic001G008800 Sobic009G209100 Sobic009G209100 Sobic001G132900--Sobic009G209100 Sobic001G132900--Sobic001G129400 Sobic001G404100 Sobic001G404100 Sobic001G132900--Sobic001G404100 Sobic001G132900--Sobic010G018000 Sobic001G136500 Sobic001G136500 Sobic001G132900--Sobic001G136500 Sobic009G130400 Sobic009G130400 Sobic001G132900--Sobic009G130400 Sobic004G117800 Sobic004G117800 Sobic001G132900--Sobic004G117800 Sobic003G326900 Sobic003G326900 Sobic001G129400--Sobic003G326900 Sobic001G129400--Sobic003G003000 Sobic010G194200 Sobic010G194200 Sobic001G129400--Sobic010G194200 Sobic001G129400--Sobic001G008800 Sobic004G248900 Sobic004G248900 Sobic001G129400--Sobic004G248900 Sobic001G129400--Sobic010G018000 Sobic001G451901 Sobic001G451901 Sobic001G129400--Sobic001G451901 Sobic001G060300 Sobic001G060300 Sobic001G129400--Sobic001G060300 Sobic001G473400 Sobic001G473400 Sobic001G129400--Sobic001G473400 Sobic003G016400--Sobic003G003000 Sobic008G008300 Sobic008G008300 Sobic003G016400--Sobic008G008300 Sobic003G016400--Sobic001G132900 Sobic003G016400--Sobic001G136500 Sobic006G181700 Sobic006G181700 Sobic003G016400--Sobic006G181700 Sobic010G079800 Sobic010G079800 Sobic003G016400--Sobic010G079800 Sobic004G275100 Sobic004G275100 Sobic003G016400--Sobic004G275100 Sobic008G107900 Sobic008G107900 Sobic003G016400--Sobic008G107900 Sobic006G276200 Sobic006G276200 Sobic003G016400--Sobic006G276200 Sobic001G008800--Sobic001G129400 Sobic001G008800--Sobic003G326900 Sobic001G008800--Sobic001G132900 Sobic001G008800--Sobic003G003000 Sobic004G136500 Sobic004G136500 Sobic001G008800--Sobic004G136500 Sobic001G008800--Sobic004G117800 Sobic001G144600 Sobic001G144600 Sobic001G008800--Sobic001G144600 Sobic006G087400 Sobic006G087400 Sobic001G008800--Sobic006G087400 Sobic001G008800--Sobic001G451901 Sobic002G388600 Sobic002G388600 Sobic002G428900--Sobic002G388600 Sobic002G428900--Sobic003G122100 Sobic005G022000 Sobic005G022000 Sobic002G428900--Sobic005G022000 Sobic004G140300 Sobic004G140300 Sobic002G428900--Sobic004G140300 Sobic010G059200 Sobic010G059200 Sobic002G428900--Sobic010G059200 Sobic009G151400 Sobic009G151400 Sobic002G428900--Sobic009G151400 Sobic001G408800 Sobic001G408800 Sobic002G428900--Sobic001G408800 Sobic004G296800 Sobic004G296800 Sobic002G428900--Sobic004G296800 Sobic003G165800 Sobic003G165800 Sobic002G428900--Sobic003G165800 Sobic001G427700 Sobic001G427700 Sobic004G018400--Sobic001G427700 Sobic004G018400--Sobic003G003000 Sobic001G416300 Sobic001G416300 Sobic004G018400--Sobic001G416300 Sobic004G018400--Sobic010G094800 Sobic001G320700 Sobic001G320700 Sobic004G018400--Sobic001G320700 Sobic003G402200 Sobic003G402200 Sobic004G018400--Sobic003G402200 Sobic004G018400--Sobic002G117200 Sobic009G190800 Sobic009G190800 Sobic004G018400--Sobic009G190800 Sobic001G315800 Sobic001G315800 Sobic004G018400--Sobic001G315800 Sobic003G122100--Sobic002G428900 Sobic009G214800 Sobic009G214800 Sobic003G122100--Sobic009G214800 Sobic005G080050 Sobic005G080050 Sobic003G122100--Sobic005G080050 Sobic003G122100--Sobic003G016400 Sobic010G168000 Sobic010G168000 Sobic003G122100--Sobic010G168000 Sobic005G071800 Sobic005G071800 Sobic003G122100--Sobic005G071800 Sobic003G248300 Sobic003G248300 Sobic003G122100--Sobic003G248300 Sobic003G122100--Sobic002G287750 Sobic004G184800 Sobic004G184800 Sobic003G122100--Sobic004G184800 Sobic010G018000--Sobic003G326900 Sobic010G018000--Sobic001G129400 Sobic010G018000--Sobic003G003000 Sobic007G034400 Sobic007G034400 Sobic010G018000--Sobic007G034400 Sobic007G143000 Sobic007G143000 Sobic010G018000--Sobic007G143000 Sobic002G045100 Sobic002G045100 Sobic010G018000--Sobic002G045100 Sobic003G367900 Sobic003G367900 Sobic010G018000--Sobic003G367900 Sobic007G108100 Sobic007G108100 Sobic010G018000--Sobic007G108100 Sobic001G431700 Sobic001G431700 Sobic010G018000--Sobic001G431700
Octagon: transcription factors


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