Gene annotation
Transcriptome id Sobic.002G292200.1
Synonym Sb02g032340
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBK20 - F-box domain and kelch repeat containing protein, expressed
UniProt C5X7R3
Pfam PF00646 PF01344
Panther DB PTHR24412 PTHR24412:SF249
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G42350 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os09g38300.1 : OsFBK20 - F-box domain and kelch repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a047940
Brachypodium KQJ91405
Barley HORVU5Hr1G088020.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G292200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G114500 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
2 Sobic.008G014100 "Ca ATPase, IIB type"(PubMedID : 22196357)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
3 Sobic.010G016900 calcium-dependent protein kinase isoform AK1, putative, expressed K13412: calcium-dependent protein kinase
4 Sobic.006G181000 -(PubMedID : 23915383)@PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
5 Sobic.001G011300 expressed protein -
6 Sobic.006G200800 phosphoribulokinase/Uridine kinase family protein, expressed K00855: PRK, phosphoribulokinase
7 Sobic.002G083900 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
8 Sobic.001G215500 expressed protein -
9 Sobic.007G203000 RNA pseudouridine synthase, putative, expressed -
10 Sobic.003G008900 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15919: glyoxylate/hydroxypyruvate reductase
11 Sobic.010G059200 cystathionine gamma-synthase, putative, expressed K01760: cysteine-S-conjugate beta-lyase
12 Sobic.001G217200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
13 Sobic.001G064000 expressed protein -
14 Sobic.001G408800 hydrolase, alpha/beta fold family protein, putative, expressed -
15 Sobic.010G243700 - -
16 Sobic.010G243600 - -
17 Sobic.007G089500 syntaxin 6, N-terminal domain containing protein, expressed -
18 Sobic.010G123300 expressed protein -
19 Sobic.004G124100 EMB1303, putative, expressed -
20 Sobic.008G135200 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1


Gene co-expression network
sample Sobic002G292200 Sobic002G292200 Sobic007G114500 Sobic007G114500 Sobic002G292200--Sobic007G114500 Sobic008G014100 Sobic008G014100 Sobic002G292200--Sobic008G014100 Sobic010G016900 Sobic010G016900 Sobic002G292200--Sobic010G016900 Sobic006G181000 Sobic006G181000 Sobic002G292200--Sobic006G181000 Sobic001G011300 Sobic001G011300 Sobic002G292200--Sobic001G011300 Sobic006G200800 Sobic006G200800 Sobic002G292200--Sobic006G200800 Sobic002G083900 Sobic002G083900 Sobic002G292200--Sobic002G083900 Sobic001G215500 Sobic001G215500 Sobic002G292200--Sobic001G215500 Sobic007G203000 Sobic007G203000 Sobic002G292200--Sobic007G203000 Sobic003G394100 Sobic003G394100 Sobic007G114500--Sobic003G394100 Sobic009G251100 Sobic009G251100 Sobic007G114500--Sobic009G251100 Sobic008G039800 Sobic008G039800 Sobic007G114500--Sobic008G039800 Sobic009G167800 Sobic009G167800 Sobic007G114500--Sobic009G167800 Sobic002G313600 Sobic002G313600 Sobic007G114500--Sobic002G313600 Sobic003G017500 Sobic003G017500 Sobic007G114500--Sobic003G017500 Sobic010G217100 Sobic010G217100 Sobic007G114500--Sobic010G217100 Sobic001G512000 Sobic001G512000 Sobic007G114500--Sobic001G512000 Sobic002G161700 Sobic002G161700 Sobic007G114500--Sobic002G161700 Sobic001G085600 Sobic001G085600 Sobic008G014100--Sobic001G085600 Sobic002G218500 Sobic002G218500 Sobic008G014100--Sobic002G218500 Sobic004G016400 Sobic004G016400 Sobic008G014100--Sobic004G016400 Sobic010G023700 Sobic010G023700 Sobic008G014100--Sobic010G023700 Sobic001G384800 Sobic001G384800 Sobic008G014100--Sobic001G384800 Sobic001G415400 Sobic001G415400 Sobic008G014100--Sobic001G415400 Sobic002G353300 Sobic002G353300 Sobic008G014100--Sobic002G353300 Sobic001G025400 Sobic001G025400 Sobic008G014100--Sobic001G025400 Sobic007G089500 Sobic007G089500 Sobic008G014100--Sobic007G089500 Sobic001G420500 Sobic001G420500 Sobic010G016900--Sobic001G420500 Sobic004G182900 Sobic004G182900 Sobic010G016900--Sobic004G182900 Sobic009G191100 Sobic009G191100 Sobic010G016900--Sobic009G191100 Sobic010G016900--Sobic006G181000 Sobic002G233900 Sobic002G233900 Sobic010G016900--Sobic002G233900 Sobic002G402600 Sobic002G402600 Sobic010G016900--Sobic002G402600 Sobic001G375700 Sobic001G375700 Sobic010G016900--Sobic001G375700 Sobic003G257700 Sobic003G257700 Sobic010G016900--Sobic003G257700 Sobic002G418200 Sobic002G418200 Sobic010G016900--Sobic002G418200 Sobic004G294700 Sobic004G294700 Sobic006G181000--Sobic004G294700 Sobic002G296100 Sobic002G296100 Sobic006G181000--Sobic002G296100 Sobic002G145000 Sobic002G145000 Sobic006G181000--Sobic002G145000 Sobic007G029700 Sobic007G029700 Sobic006G181000--Sobic007G029700 Sobic006G181000--Sobic004G182900 Sobic006G181000--Sobic002G218500 Sobic001G037500 Sobic001G037500 Sobic006G181000--Sobic001G037500 Sobic006G181000--Sobic010G016900 Sobic008G001900 Sobic008G001900 Sobic006G181000--Sobic008G001900 Sobic001G306700 Sobic001G306700 Sobic001G011300--Sobic001G306700 Sobic003G265500 Sobic003G265500 Sobic001G011300--Sobic003G265500 Sobic004G070800 Sobic004G070800 Sobic001G011300--Sobic004G070800 Sobic010G091200 Sobic010G091200 Sobic001G011300--Sobic010G091200 Sobic001G463500 Sobic001G463500 Sobic001G011300--Sobic001G463500 Sobic003G420900 Sobic003G420900 Sobic001G011300--Sobic003G420900 Sobic001G008700 Sobic001G008700 Sobic001G011300--Sobic001G008700 Sobic004G068300 Sobic004G068300 Sobic001G011300--Sobic004G068300 Sobic004G015700 Sobic004G015700 Sobic001G011300--Sobic004G015700 Sobic008G019100 Sobic008G019100 Sobic006G200800--Sobic008G019100 Sobic008G021300 Sobic008G021300 Sobic006G200800--Sobic008G021300 Sobic006G054300 Sobic006G054300 Sobic006G200800--Sobic006G054300 Sobic001G192100 Sobic001G192100 Sobic006G200800--Sobic001G192100 Sobic004G274100 Sobic004G274100 Sobic006G200800--Sobic004G274100 Sobic001G010100 Sobic001G010100 Sobic006G200800--Sobic001G010100 Sobic004G343900 Sobic004G343900 Sobic006G200800--Sobic004G343900 Sobic003G132100 Sobic003G132100 Sobic006G200800--Sobic003G132100 Sobic001G527000 Sobic001G527000 Sobic006G200800--Sobic001G527000 Sobic010G085200 Sobic010G085200 Sobic002G083900--Sobic010G085200 Sobic001G234200 Sobic001G234200 Sobic002G083900--Sobic001G234200 Sobic003G167900 Sobic003G167900 Sobic002G083900--Sobic003G167900 Sobic006G010000 Sobic006G010000 Sobic002G083900--Sobic006G010000 Sobic001G251100 Sobic001G251100 Sobic002G083900--Sobic001G251100 Sobic006G036100 Sobic006G036100 Sobic002G083900--Sobic006G036100 Sobic008G088806 Sobic008G088806 Sobic002G083900--Sobic008G088806 Sobic009G238850 Sobic009G238850 Sobic002G083900--Sobic009G238850 Sobic004G086700 Sobic004G086700 Sobic002G083900--Sobic004G086700 Sobic009G207100 Sobic009G207100 Sobic001G215500--Sobic009G207100 Sobic004G006700 Sobic004G006700 Sobic001G215500--Sobic004G006700 Sobic008G093200 Sobic008G093200 Sobic001G215500--Sobic008G093200 Sobic010G224900 Sobic010G224900 Sobic001G215500--Sobic010G224900 Sobic004G182500 Sobic004G182500 Sobic001G215500--Sobic004G182500 Sobic004G027000 Sobic004G027000 Sobic001G215500--Sobic004G027000 Sobic001G202400 Sobic001G202400 Sobic001G215500--Sobic001G202400 Sobic004G225300 Sobic004G225300 Sobic001G215500--Sobic004G225300 Sobic006G195400 Sobic006G195400 Sobic001G215500--Sobic006G195400 Sobic004G203500 Sobic004G203500 Sobic007G203000--Sobic004G203500 Sobic009G231100 Sobic009G231100 Sobic007G203000--Sobic009G231100 Sobic001G371700 Sobic001G371700 Sobic007G203000--Sobic001G371700 Sobic001G217200 Sobic001G217200 Sobic007G203000--Sobic001G217200 Sobic005G031000 Sobic005G031000 Sobic007G203000--Sobic005G031000 Sobic001G361300 Sobic001G361300 Sobic007G203000--Sobic001G361300 Sobic010G059200 Sobic010G059200 Sobic007G203000--Sobic010G059200 Sobic003G165800 Sobic003G165800 Sobic007G203000--Sobic003G165800 Sobic008G125100 Sobic008G125100 Sobic007G203000--Sobic008G125100
Octagon: transcription factors


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