Gene annotation
Transcriptome id Sobic.006G200800.1
Synonym Sb06g027270, PRK
Functional annotation phosphoribulokinase/Uridine kinase family protein, expressed
UniProt C5YF36
Pfam PF00485
Panther DB PTHR10285 PTHR10285:SF74
NCBI CDD -
KEGG Orthology K00855; PRK, phosphoribulokinase
Gene Ontology GO:0016301; kinase activity GO:0008152metabolic process GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G32060 : phosphoribulokinase
RAP-DB (Rice) LOC_Os02g47020.1 : phosphoribulokinase/Uridine kinase family protein, expressed
MaizeGDB (Corn) Zm00025a032414 , Zm00025a021650 , Zm00025a009967
Brachypodium -
Barley HORVU6Hr1G067660.7 , HORVU6Hr1G067660.6 , HORVU6Hr1G067660.5 , HORVU6Hr1G067660.4 , HORVU6Hr1G067660.3 , HORVU6Hr1G067660.1 , HORVU6Hr1G067660.8
Wheat TraesCS6B02G294700 , TraesCS6D02G247400 , TraesCS6A02G267300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G019100 - -
2 Sobic.008G021300 Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed -
3 Sobic.006G054300 amidohydrolase family protein, expressed -
4 Sobic.001G192100 "Belongs to the cytochrome P450 family, up-regulated under all the stress condition"(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Belongs to the cytochrome P450 family(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
5 Sobic.004G274100 expressed protein -
6 Sobic.001G010100 ankyrin repeat domain containing protein, expressed -
7 Sobic.004G343900 expressed protein -
8 Sobic.003G132100 magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
9 Sobic.001G527000 PsbP-like protein 1 (At)(PubMedID : 27208977)@Photosystem I subunit P-like protein(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
10 Sobic.005G123200 cbbY, putative, expressed -
11 Sobic.002G152700 rhodanese-like, putative, expressed -
12 Sobic.010G094301 - -
13 Sobic.009G030900 bundle sheath defective protein 2, putative, expressed -
14 Sobic.005G116100 expressed protein -
15 Sobic.010G006350 - -
16 Sobic.006G155700 ABC transporter(PubMedID : 23463491)@white-brown complex homolog protein 11, putative, expressed -
17 Sobic.001G314200 expressed protein -
18 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
19 Sobic.004G023200 Polyketide cyclase/dehydrase and lipid transport superfamily protein(PubMedID : 26465154)@membrane related protein CP5, putative, expressed -
20 Sobic.003G197400 Protein lycopene epsilon cyclase (Os)(PubMedID : 27208977)@-(PubMedID : 29017446)@lycopene epsilon cyclase, chloroplast precursor, putative, expressed K06444: lcyE, lycopene epsilon-cyclase


Gene co-expression network
sample Sobic006G200800 Sobic006G200800 Sobic008G019100 Sobic008G019100 Sobic006G200800--Sobic008G019100 Sobic008G021300 Sobic008G021300 Sobic006G200800--Sobic008G021300 Sobic006G054300 Sobic006G054300 Sobic006G200800--Sobic006G054300 Sobic001G192100 Sobic001G192100 Sobic006G200800--Sobic001G192100 Sobic004G274100 Sobic004G274100 Sobic006G200800--Sobic004G274100 Sobic001G010100 Sobic001G010100 Sobic006G200800--Sobic001G010100 Sobic004G343900 Sobic004G343900 Sobic006G200800--Sobic004G343900 Sobic003G132100 Sobic003G132100 Sobic006G200800--Sobic003G132100 Sobic001G527000 Sobic001G527000 Sobic006G200800--Sobic001G527000 Sobic008G019100--Sobic003G132100 Sobic003G433900 Sobic003G433900 Sobic008G019100--Sobic003G433900 Sobic001G415400 Sobic001G415400 Sobic008G019100--Sobic001G415400 Sobic003G197400 Sobic003G197400 Sobic008G019100--Sobic003G197400 Sobic004G175500 Sobic004G175500 Sobic008G019100--Sobic004G175500 Sobic008G051000 Sobic008G051000 Sobic008G019100--Sobic008G051000 Sobic002G152700 Sobic002G152700 Sobic008G019100--Sobic002G152700 Sobic004G343300 Sobic004G343300 Sobic008G019100--Sobic004G343300 Sobic008G019100--Sobic001G192100 Sobic003G303700 Sobic003G303700 Sobic008G021300--Sobic003G303700 Sobic008G021300--Sobic002G152700 Sobic007G004800 Sobic007G004800 Sobic008G021300--Sobic007G004800 Sobic006G272900 Sobic006G272900 Sobic008G021300--Sobic006G272900 Sobic004G035500 Sobic004G035500 Sobic008G021300--Sobic004G035500 Sobic010G201700 Sobic010G201700 Sobic008G021300--Sobic010G201700 Sobic001G519800 Sobic001G519800 Sobic008G021300--Sobic001G519800 Sobic001G102800 Sobic001G102800 Sobic008G021300--Sobic001G102800 Sobic009G043000 Sobic009G043000 Sobic008G021300--Sobic009G043000 Sobic005G116100 Sobic005G116100 Sobic006G054300--Sobic005G116100 Sobic008G078400 Sobic008G078400 Sobic006G054300--Sobic008G078400 Sobic009G030900 Sobic009G030900 Sobic006G054300--Sobic009G030900 Sobic006G054300--Sobic004G343900 Sobic007G143700 Sobic007G143700 Sobic006G054300--Sobic007G143700 Sobic002G274200 Sobic002G274200 Sobic006G054300--Sobic002G274200 Sobic001G104800 Sobic001G104800 Sobic006G054300--Sobic001G104800 Sobic005G123200 Sobic005G123200 Sobic006G054300--Sobic005G123200 Sobic003G157400 Sobic003G157400 Sobic006G054300--Sobic003G157400 Sobic003G057900 Sobic003G057900 Sobic001G192100--Sobic003G057900 Sobic010G006350 Sobic010G006350 Sobic001G192100--Sobic010G006350 Sobic001G464700 Sobic001G464700 Sobic001G192100--Sobic001G464700 Sobic010G255600 Sobic010G255600 Sobic001G192100--Sobic010G255600 Sobic010G094301 Sobic010G094301 Sobic001G192100--Sobic010G094301 Sobic003G099400 Sobic003G099400 Sobic001G192100--Sobic003G099400 Sobic001G192100--Sobic003G132100 Sobic009G091850 Sobic009G091850 Sobic001G192100--Sobic009G091850 Sobic009G132900 Sobic009G132900 Sobic001G192100--Sobic009G132900 Sobic007G140800 Sobic007G140800 Sobic004G274100--Sobic007G140800 Sobic004G274100--Sobic003G303700 Sobic002G098800 Sobic002G098800 Sobic004G274100--Sobic002G098800 Sobic009G113800 Sobic009G113800 Sobic004G274100--Sobic009G113800 Sobic004G274100--Sobic001G102800 Sobic004G274100--Sobic008G021300 Sobic004G274100--Sobic010G201700 Sobic001G069000 Sobic001G069000 Sobic004G274100--Sobic001G069000 Sobic008G188600 Sobic008G188600 Sobic004G274100--Sobic008G188600 Sobic001G010100--Sobic003G433900 Sobic004G249800 Sobic004G249800 Sobic001G010100--Sobic004G249800 Sobic001G010100--Sobic009G030900 Sobic001G010100--Sobic004G175500 Sobic003G387800 Sobic003G387800 Sobic001G010100--Sobic003G387800 Sobic001G010100--Sobic008G021300 Sobic001G314200 Sobic001G314200 Sobic001G010100--Sobic001G314200 Sobic001G010100--Sobic007G004800 Sobic002G227700 Sobic002G227700 Sobic001G010100--Sobic002G227700 Sobic004G307400 Sobic004G307400 Sobic004G343900--Sobic004G307400 Sobic008G171300 Sobic008G171300 Sobic004G343900--Sobic008G171300 Sobic003G387100 Sobic003G387100 Sobic004G343900--Sobic003G387100 Sobic004G343900--Sobic008G188600 Sobic005G149400 Sobic005G149400 Sobic004G343900--Sobic005G149400 Sobic004G343900--Sobic009G030900 Sobic009G059300 Sobic009G059300 Sobic004G343900--Sobic009G059300 Sobic004G343900--Sobic004G274100 Sobic006G067400 Sobic006G067400 Sobic004G343900--Sobic006G067400 Sobic003G132100--Sobic004G343300 Sobic003G132100--Sobic008G051000 Sobic003G132100--Sobic003G197400 Sobic006G264201 Sobic006G264201 Sobic003G132100--Sobic006G264201 Sobic004G238500 Sobic004G238500 Sobic003G132100--Sobic004G238500 Sobic003G132100--Sobic003G433900 Sobic003G132100--Sobic004G249800 Sobic001G448400 Sobic001G448400 Sobic003G132100--Sobic001G448400 Sobic009G091800 Sobic009G091800 Sobic003G132100--Sobic009G091800 Sobic001G527000--Sobic009G091850 Sobic007G004600 Sobic007G004600 Sobic001G527000--Sobic007G004600 Sobic001G527000--Sobic002G152700 Sobic001G527000--Sobic001G415400 Sobic001G527000--Sobic005G123200 Sobic010G277600 Sobic010G277600 Sobic001G527000--Sobic010G277600 Sobic009G183700 Sobic009G183700 Sobic001G527000--Sobic009G183700 Sobic001G527000--Sobic009G030900 Sobic001G527000--Sobic007G143700
Octagon: transcription factors


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