Gene annotation
Transcriptome id Sobic.002G363600.1
Synonym Sb02g038330, EDL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
circadian clock coupling factor-related, putative, expressed
UniProt C5XD84
Pfam -
Panther DB PTHR31348 PTHR31348:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G39360 : EID1-like 2
RAP-DB (Rice) LOC_Os07g40710.2 : circadian clock coupling factor-related, putative, expressed
MaizeGDB (Corn) Zm00025a015096 , Zm00025a048652
Brachypodium KQJ93727 , KQJ93726
Barley HORVU2Hr1G034270.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G363600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
2 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
3 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
4 Sobic.009G198100 expressed protein -
5 Sobic.004G205600 bromodomain domain containing protein, expressed -
6 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
7 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
8 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
9 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
10 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
11 Sobic.007G104800 expressed protein -
12 Sobic.002G090800 expressed protein -
13 Sobic.004G240800 protein kinase domain containing protein, expressed -
14 Sobic.003G298100 one zinc finger protein, putative, expressed -
15 Sobic.002G034600 zinc ion binding protein, putative, expressed -
16 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
17 Sobic.001G309400 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
18 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
19 Sobic.002G399100 zinc finger, RING-type, putative, expressed K15688: E3 ubiquitin-protein ligase MUL1
20 Sobic.002G320500 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic002G363600 Sobic002G363600 Sobic007G115200 Sobic007G115200 Sobic002G363600--Sobic007G115200 Sobic002G010300 Sobic002G010300 Sobic002G363600--Sobic002G010300 Sobic007G026300 Sobic007G026300 Sobic002G363600--Sobic007G026300 Sobic009G198100 Sobic009G198100 Sobic002G363600--Sobic009G198100 Sobic004G205600 Sobic004G205600 Sobic002G363600--Sobic004G205600 Sobic001G107500 Sobic001G107500 Sobic002G363600--Sobic001G107500 Sobic003G081000 Sobic003G081000 Sobic002G363600--Sobic003G081000 Sobic001G016000 Sobic001G016000 Sobic002G363600--Sobic001G016000 Sobic004G274200 Sobic004G274200 Sobic002G363600--Sobic004G274200 Sobic007G115200--Sobic001G107500 Sobic007G115200--Sobic001G016000 Sobic001G309400 Sobic001G309400 Sobic007G115200--Sobic001G309400 Sobic007G104800 Sobic007G104800 Sobic007G115200--Sobic007G104800 Sobic002G347000 Sobic002G347000 Sobic007G115200--Sobic002G347000 Sobic007G115200--Sobic002G363600 Sobic002G351900 Sobic002G351900 Sobic007G115200--Sobic002G351900 Sobic001G281600 Sobic001G281600 Sobic007G115200--Sobic001G281600 Sobic002G092300 Sobic002G092300 Sobic007G115200--Sobic002G092300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic007G026300--Sobic004G021100 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic007G118200 Sobic007G118200 Sobic009G198100--Sobic007G118200 Sobic002G034600 Sobic002G034600 Sobic009G198100--Sobic002G034600 Sobic010G033400 Sobic010G033400 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic008G174300 Sobic008G174300 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic003G359300 Sobic003G359300 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic006G133800 Sobic006G133800 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G107500--Sobic001G497300 Sobic001G107500--Sobic007G104800 Sobic001G107500--Sobic004G205600 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic001G016000--Sobic002G034600 Sobic010G236400 Sobic010G236400 Sobic001G016000--Sobic010G236400 Sobic003G397800 Sobic003G397800 Sobic001G016000--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic001G016000--Sobic001G409600 Sobic001G016000--Sobic004G205600 Sobic001G016000--Sobic004G274200 Sobic002G283600 Sobic002G283600 Sobic001G016000--Sobic002G283600 Sobic007G119200 Sobic007G119200 Sobic001G016000--Sobic007G119200 Sobic001G016000--Sobic006G173100 Sobic008G047800 Sobic008G047800 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G146500 Sobic004G146500 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.