Gene annotation
Transcriptome id Sobic.002G387300.1,Sobic.002G387300.2
Synonym Sb02g040360
Functional annotation expressed protein
UniProt C5X387
Pfam PF08561
Panther DB PTHR28595 PTHR28595:SF1
NCBI CDD -
KEGG Orthology K17435; large subunit ribosomal protein L54
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01740 : Mitochondrial ribosomal protein L37
RAP-DB (Rice) LOC_Os12g14080.1,LOC_Os12g14080.2 : expressed protein
MaizeGDB (Corn) Zm00025a048871
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G387300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
2 Sobic.001G286300 - -
3 Sobic.003G024500 expressed protein -
4 Sobic.002G296200 expressed protein -
5 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
6 Sobic.001G074700 cytochrome c oxidase-related, putative, expressed K02266: cytochrome c oxidase subunit 6a
7 Sobic.002G257400 peptidase, T1 family, putative, expressed -
8 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
9 Sobic.002G309700 ATP synthase delta chain, mitochondrial precursor, putative, expressed K02134: ATPeF1D, ATP5D, F-type H+-transporting ATPase subunit delta
10 Sobic.001G181500 expressed protein -
11 Sobic.010G007400 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
12 Sobic.001G350600 cytochrome c oxidase subunit, putative, expressed K02267: cytochrome c oxidase subunit 6b
13 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
14 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
15 Sobic.002G180300 isochorismate synthase 1, chloroplast precursor, putative, expressed K15040: voltage-dependent anion channel protein 2
16 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
17 Sobic.001G206700 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit
18 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.009G215300 fiber protein Fb11, putative, expressed -
20 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3


Gene co-expression network
sample Sobic002G387300 Sobic002G387300 Sobic006G013000 Sobic006G013000 Sobic002G387300--Sobic006G013000 Sobic001G286300 Sobic001G286300 Sobic002G387300--Sobic001G286300 Sobic003G024500 Sobic003G024500 Sobic002G387300--Sobic003G024500 Sobic002G296200 Sobic002G296200 Sobic002G387300--Sobic002G296200 Sobic002G222900 Sobic002G222900 Sobic002G387300--Sobic002G222900 Sobic001G074700 Sobic001G074700 Sobic002G387300--Sobic001G074700 Sobic002G257400 Sobic002G257400 Sobic002G387300--Sobic002G257400 Sobic010G008800 Sobic010G008800 Sobic002G387300--Sobic010G008800 Sobic002G309700 Sobic002G309700 Sobic002G387300--Sobic002G309700 Sobic006G013000--Sobic002G296200 Sobic006G013000--Sobic002G309700 Sobic006G013000--Sobic001G074700 Sobic002G180300 Sobic002G180300 Sobic006G013000--Sobic002G180300 Sobic001G047800 Sobic001G047800 Sobic006G013000--Sobic001G047800 Sobic007G013900 Sobic007G013900 Sobic006G013000--Sobic007G013900 Sobic007G134900 Sobic007G134900 Sobic006G013000--Sobic007G134900 Sobic001G404800 Sobic001G404800 Sobic006G013000--Sobic001G404800 Sobic009G215300 Sobic009G215300 Sobic006G013000--Sobic009G215300 Sobic001G286300--Sobic002G296200 Sobic008G094600 Sobic008G094600 Sobic001G286300--Sobic008G094600 Sobic001G286300--Sobic006G013000 Sobic001G128400 Sobic001G128400 Sobic001G286300--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic001G286300--Sobic003G129800 Sobic001G286300--Sobic002G309700 Sobic009G001900 Sobic009G001900 Sobic001G286300--Sobic009G001900 Sobic003G296800 Sobic003G296800 Sobic001G286300--Sobic003G296800 Sobic007G161700 Sobic007G161700 Sobic001G286300--Sobic007G161700 Sobic009G232900 Sobic009G232900 Sobic003G024500--Sobic009G232900 Sobic009G149800 Sobic009G149800 Sobic003G024500--Sobic009G149800 Sobic005G111100 Sobic005G111100 Sobic003G024500--Sobic005G111100 Sobic003G024500--Sobic001G286300 Sobic003G024500--Sobic002G296200 Sobic003G024500--Sobic001G128400 Sobic003G024500--Sobic002G387300 Sobic001G066700 Sobic001G066700 Sobic003G024500--Sobic001G066700 Sobic003G358300 Sobic003G358300 Sobic003G024500--Sobic003G358300 Sobic002G296200--Sobic006G013000 Sobic002G296200--Sobic007G134900 Sobic002G296200--Sobic001G074700 Sobic003G215700 Sobic003G215700 Sobic002G296200--Sobic003G215700 Sobic002G296200--Sobic002G309700 Sobic001G134400 Sobic001G134400 Sobic002G296200--Sobic001G134400 Sobic002G296200--Sobic001G047800 Sobic001G286200 Sobic001G286200 Sobic002G296200--Sobic001G286200 Sobic002G296200--Sobic003G129800 Sobic003G155400 Sobic003G155400 Sobic002G222900--Sobic003G155400 Sobic001G224400 Sobic001G224400 Sobic002G222900--Sobic001G224400 Sobic007G134000 Sobic007G134000 Sobic002G222900--Sobic007G134000 Sobic010G154700 Sobic010G154700 Sobic002G222900--Sobic010G154700 Sobic007G068000 Sobic007G068000 Sobic002G222900--Sobic007G068000 Sobic010G225300 Sobic010G225300 Sobic002G222900--Sobic010G225300 Sobic001G459200 Sobic001G459200 Sobic002G222900--Sobic001G459200 Sobic002G222900--Sobic001G128400 Sobic007G051000 Sobic007G051000 Sobic002G222900--Sobic007G051000 Sobic004G170400 Sobic004G170400 Sobic001G074700--Sobic004G170400 Sobic001G350600 Sobic001G350600 Sobic001G074700--Sobic001G350600 Sobic004G259200 Sobic004G259200 Sobic001G074700--Sobic004G259200 Sobic001G074700--Sobic002G309700 Sobic001G074700--Sobic010G154700 Sobic001G074700--Sobic002G296200 Sobic009G119900 Sobic009G119900 Sobic001G074700--Sobic009G119900 Sobic001G074700--Sobic001G047800 Sobic002G418400 Sobic002G418400 Sobic001G074700--Sobic002G418400 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic004G224900 Sobic004G224900 Sobic002G257400--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic002G257400--Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic002G257400--Sobic002G428200 Sobic007G152400 Sobic007G152400 Sobic002G257400--Sobic007G152400 Sobic004G204800 Sobic004G204800 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic001G058100 Sobic001G058100 Sobic002G257400--Sobic001G058100 Sobic010G008800--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic010G008800--Sobic001G342200 Sobic010G008800--Sobic001G350600 Sobic010G008800--Sobic006G013000 Sobic004G066800 Sobic004G066800 Sobic010G008800--Sobic004G066800 Sobic004G310300 Sobic004G310300 Sobic010G008800--Sobic004G310300 Sobic009G115700 Sobic009G115700 Sobic010G008800--Sobic009G115700 Sobic010G008800--Sobic003G129800 Sobic001G505500 Sobic001G505500 Sobic010G008800--Sobic001G505500 Sobic004G260200 Sobic004G260200 Sobic002G309700--Sobic004G260200 Sobic002G309700--Sobic001G047800 Sobic002G356400 Sobic002G356400 Sobic002G309700--Sobic002G356400 Sobic002G309700--Sobic009G215300 Sobic002G309700--Sobic001G404800 Sobic002G309700--Sobic001G074700 Sobic002G309700--Sobic002G296200 Sobic001G465800 Sobic001G465800 Sobic002G309700--Sobic001G465800 Sobic002G309700--Sobic003G215700
Octagon: transcription factors


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