Gene annotation
Transcriptome id Sobic.002G390900.1
Synonym Sb02g040640
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
WD40-like Beta Propeller Repeat family protein, expressed
UniProt A0A1W0W7M5
Pfam PF07676
Panther DB PTHR32161 PTHR32161:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01870 : tolB protein-related
RAP-DB (Rice) LOC_Os07g44410.1 : WD40-like Beta Propeller Repeat family protein, expressed
MaizeGDB (Corn) Zm00025a048921
Brachypodium KQK14998
Barley HORVU2Hr1G026820.4 , HORVU2Hr1G026820.2 , HORVU2Hr1G026820.3 , HORVU2Hr1G026820.1 , HORVU2Hr1G026830.1 , HORVU2Hr1G026840.1
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.002G390900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G113500 heavy metal associated domain containing protein, expressed -
2 Sobic.010G210100 "GW6(Ortholog in rice:Song et al., 2015)"(PubMedID : 31659936)@HLS, putative, expressed -
3 Sobic.002G406900 OsFBX444 - F-box domain containing protein, expressed -
4 Sobic.003G026400 aquaporin protein, putative, expressed K09874: aquaporin NIP
5 Sobic.010G043900 expressed protein -
6 Sobic.001G114900 - -
7 Sobic.001G039000 DUF567 domain containing protein, putative, expressed -
8 Sobic.003G405200 regulatory protein, putative, expressed -
9 Sobic.002G422300 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
10 Sobic.001G272700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.008G036800 alkylresorcinol synthase gene preferentially expressed in root hair (PubMedID : 20348430)@Chalcone and stilbene synthase family("PubMedID : 26759170,PubMedID : 24597475")@chalcone synthase, putative, expressed -
12 Sobic.006G097000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
13 Sobic.003G079200 - -
14 Sobic.008G027600 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.002G012400 DUF538 domain containing protein, putative, expressed -
16 Sobic.002G012300 DUF538 domain containing protein, putative, expressed -
17 Sobic.006G101300 expressed protein -
18 Sobic.006G198800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@pathogenesis-related Bet v I family protein, putative, expressed -
19 Sobic.002G243000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
20 Sobic.006G234900 expressed protein -


Gene co-expression network
sample Sobic002G390900 Sobic002G390900 Sobic006G113500 Sobic006G113500 Sobic002G390900--Sobic006G113500 Sobic010G210100 Sobic010G210100 Sobic002G390900--Sobic010G210100 Sobic002G406900 Sobic002G406900 Sobic002G390900--Sobic002G406900 Sobic003G026400 Sobic003G026400 Sobic002G390900--Sobic003G026400 Sobic010G043900 Sobic010G043900 Sobic002G390900--Sobic010G043900 Sobic001G114900 Sobic001G114900 Sobic002G390900--Sobic001G114900 Sobic001G039000 Sobic001G039000 Sobic002G390900--Sobic001G039000 Sobic003G405200 Sobic003G405200 Sobic002G390900--Sobic003G405200 Sobic002G422300 Sobic002G422300 Sobic002G390900--Sobic002G422300 Sobic004G148100 Sobic004G148100 Sobic006G113500--Sobic004G148100 Sobic002G040900 Sobic002G040900 Sobic006G113500--Sobic002G040900 Sobic001G054500 Sobic001G054500 Sobic006G113500--Sobic001G054500 Sobic001G256200 Sobic001G256200 Sobic006G113500--Sobic001G256200 Sobic007G008100 Sobic007G008100 Sobic006G113500--Sobic007G008100 Sobic001G325400 Sobic001G325400 Sobic006G113500--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic006G113500--Sobic006G039100 Sobic006G162100 Sobic006G162100 Sobic006G113500--Sobic006G162100 Sobic002G042000 Sobic002G042000 Sobic006G113500--Sobic002G042000 Sobic004G245700 Sobic004G245700 Sobic010G210100--Sobic004G245700 Sobic009G145500 Sobic009G145500 Sobic010G210100--Sobic009G145500 Sobic009G145600 Sobic009G145600 Sobic010G210100--Sobic009G145600 Sobic009G111000 Sobic009G111000 Sobic010G210100--Sobic009G111000 Sobic009G145700 Sobic009G145700 Sobic010G210100--Sobic009G145700 Sobic004G203700 Sobic004G203700 Sobic010G210100--Sobic004G203700 Sobic009G184100 Sobic009G184100 Sobic010G210100--Sobic009G184100 Sobic003G043600 Sobic003G043600 Sobic010G210100--Sobic003G043600 Sobic009G200566 Sobic009G200566 Sobic010G210100--Sobic009G200566 Sobic005G002700 Sobic005G002700 Sobic002G406900--Sobic005G002700 Sobic006G234900 Sobic006G234900 Sobic002G406900--Sobic006G234900 Sobic006G101300 Sobic006G101300 Sobic002G406900--Sobic006G101300 Sobic006G026500 Sobic006G026500 Sobic002G406900--Sobic006G026500 Sobic004G159400 Sobic004G159400 Sobic002G406900--Sobic004G159400 Sobic008G036800 Sobic008G036800 Sobic002G406900--Sobic008G036800 Sobic001G512633 Sobic001G512633 Sobic002G406900--Sobic001G512633 Sobic003G313100 Sobic003G313100 Sobic002G406900--Sobic003G313100 Sobic002G044600 Sobic002G044600 Sobic002G406900--Sobic002G044600 Sobic003G026400--Sobic001G114900 Sobic003G026400--Sobic010G043900 Sobic002G338500 Sobic002G338500 Sobic003G026400--Sobic002G338500 Sobic006G158400 Sobic006G158400 Sobic003G026400--Sobic006G158400 Sobic006G008000 Sobic006G008000 Sobic003G026400--Sobic006G008000 Sobic008G027600 Sobic008G027600 Sobic003G026400--Sobic008G027600 Sobic010G082600 Sobic010G082600 Sobic003G026400--Sobic010G082600 Sobic006G141700 Sobic006G141700 Sobic003G026400--Sobic006G141700 Sobic003G264600 Sobic003G264600 Sobic003G026400--Sobic003G264600 Sobic010G043900--Sobic002G338500 Sobic010G043900--Sobic008G027600 Sobic010G043900--Sobic002G422300 Sobic005G213600 Sobic005G213600 Sobic010G043900--Sobic005G213600 Sobic010G043900--Sobic006G158400 Sobic001G238400 Sobic001G238400 Sobic010G043900--Sobic001G238400 Sobic010G043900--Sobic003G026400 Sobic010G043900--Sobic003G043600 Sobic005G213500 Sobic005G213500 Sobic010G043900--Sobic005G213500 Sobic001G114900--Sobic003G026400 Sobic001G114900--Sobic008G027600 Sobic002G010900 Sobic002G010900 Sobic001G114900--Sobic002G010900 Sobic002G369400 Sobic002G369400 Sobic001G114900--Sobic002G369400 Sobic008G022000 Sobic008G022000 Sobic001G114900--Sobic008G022000 Sobic001G114900--Sobic006G008000 Sobic001G114900--Sobic002G422300 Sobic008G158332 Sobic008G158332 Sobic001G114900--Sobic008G158332 Sobic008G066200 Sobic008G066200 Sobic001G114900--Sobic008G066200 Sobic010G132000 Sobic010G132000 Sobic001G039000--Sobic010G132000 Sobic001G288900 Sobic001G288900 Sobic001G039000--Sobic001G288900 Sobic003G315800 Sobic003G315800 Sobic001G039000--Sobic003G315800 Sobic002G347100 Sobic002G347100 Sobic001G039000--Sobic002G347100 Sobic003G258600 Sobic003G258600 Sobic001G039000--Sobic003G258600 Sobic001G039000--Sobic009G200566 Sobic007G165000 Sobic007G165000 Sobic001G039000--Sobic007G165000 Sobic010G213800 Sobic010G213800 Sobic001G039000--Sobic010G213800 Sobic009G176500 Sobic009G176500 Sobic001G039000--Sobic009G176500 Sobic006G202600 Sobic006G202600 Sobic003G405200--Sobic006G202600 Sobic006G050800 Sobic006G050800 Sobic003G405200--Sobic006G050800 Sobic004G301600 Sobic004G301600 Sobic003G405200--Sobic004G301600 Sobic002G301900 Sobic002G301900 Sobic003G405200--Sobic002G301900 Sobic004G180700 Sobic004G180700 Sobic003G405200--Sobic004G180700 Sobic010G045500 Sobic010G045500 Sobic003G405200--Sobic010G045500 Sobic006G170600 Sobic006G170600 Sobic003G405200--Sobic006G170600 Sobic010G196000 Sobic010G196000 Sobic003G405200--Sobic010G196000 Sobic005G163800 Sobic005G163800 Sobic003G405200--Sobic005G163800 Sobic002G422300--Sobic010G043900 Sobic002G422300--Sobic008G158332 Sobic002G422300--Sobic002G010900 Sobic002G422300--Sobic001G114900 Sobic006G268500 Sobic006G268500 Sobic002G422300--Sobic006G268500 Sobic009G071000 Sobic009G071000 Sobic002G422300--Sobic009G071000 Sobic002G422300--Sobic008G027600 Sobic002G422300--Sobic006G101300 Sobic002G422300--Sobic003G026400
Octagon: transcription factors


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