Gene annotation
Transcriptome id Sobic.002G396800.1
Synonym Sb02g041190
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt C5X404
Pfam PF03372
Panther DB PTHR14859:SF2 PTHR14859
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G21530 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os03g24610.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048969
Brachypodium KQK14937
Barley HORVU2Hr1G025090.6 , HORVU2Hr1G025090.4 , HORVU2Hr1G025090.5 , HORVU2Hr1G025090.2 , HORVU2Hr1G025090.3 , HORVU2Hr1G025090.1
Wheat TraesCS2B02G166800 , TraesCS2A02G141600 , TraesCS2D02G145100
Populus -


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cDNA sequences
Sobic.002G396800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066400 cytochrome P450, putative, expressed K00517: indol-3-yl-methylglucosinolate hydroxylase
2 Sobic.003G214900 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.001G158300 SNF7 domain containing protein, putative, expressed K12191: charged multivesicular body protein 2A
4 Sobic.010G212700 tetraspanin family protein, putative, expressed -
5 Sobic.005G143100 expressed protein -
6 Sobic.001G468000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF677 domain containing protein, putative, expressed -
7 Sobic.007G018500 galactosyltransferase family protein, putative, expressed -
8 Sobic.002G244600 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
9 Sobic.001G399600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.002G284100 ATROPGEF7/ROPGEF7, putative, expressed -
11 Sobic.003G220500 TTL1, putative, expressed -
12 Sobic.002G237000 fasciclin domain containing protein, expressed -
13 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
14 Sobic.007G084200 expressed protein -
15 Sobic.003G022900 RNA recognition motif containing protein, putative, expressed K10643: CNOT4, NOT4, CCR4-NOT transcription complex subunit 4
16 Sobic.003G100700 serine/threonine-protein kinase, putative, expressed -
17 Sobic.006G212400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@QRT3, putative, expressed -
18 Sobic.004G035800 uncharacterized protein At4g06744 precursor, putative, expressed -
19 Sobic.003G224700 glycosyltransferase family protein 1, putative, expressed -
20 Sobic.001G043700 expressed protein -


Gene co-expression network
sample Sobic002G396800 Sobic002G396800 Sobic006G066400 Sobic006G066400 Sobic002G396800--Sobic006G066400 Sobic003G214900 Sobic003G214900 Sobic002G396800--Sobic003G214900 Sobic001G158300 Sobic001G158300 Sobic002G396800--Sobic001G158300 Sobic010G212700 Sobic010G212700 Sobic002G396800--Sobic010G212700 Sobic005G143100 Sobic005G143100 Sobic002G396800--Sobic005G143100 Sobic001G468000 Sobic001G468000 Sobic002G396800--Sobic001G468000 Sobic007G018500 Sobic007G018500 Sobic002G396800--Sobic007G018500 Sobic002G244600 Sobic002G244600 Sobic002G396800--Sobic002G244600 Sobic001G399600 Sobic001G399600 Sobic002G396800--Sobic001G399600 Sobic006G066400--Sobic001G468000 Sobic003G022900 Sobic003G022900 Sobic006G066400--Sobic003G022900 Sobic006G066400--Sobic010G212700 Sobic010G180200 Sobic010G180200 Sobic006G066400--Sobic010G180200 Sobic001G171100 Sobic001G171100 Sobic006G066400--Sobic001G171100 Sobic002G196500 Sobic002G196500 Sobic006G066400--Sobic002G196500 Sobic002G366000 Sobic002G366000 Sobic006G066400--Sobic002G366000 Sobic006G066400--Sobic002G244600 Sobic006G272800 Sobic006G272800 Sobic006G066400--Sobic006G272800 Sobic008G026400 Sobic008G026400 Sobic003G214900--Sobic008G026400 Sobic003G214900--Sobic005G143100 Sobic002G253900 Sobic002G253900 Sobic003G214900--Sobic002G253900 Sobic001G123100 Sobic001G123100 Sobic003G214900--Sobic001G123100 Sobic003G240100 Sobic003G240100 Sobic003G214900--Sobic003G240100 Sobic009G254000 Sobic009G254000 Sobic003G214900--Sobic009G254000 Sobic003G220500 Sobic003G220500 Sobic003G214900--Sobic003G220500 Sobic003G214900--Sobic002G396800 Sobic003G100700 Sobic003G100700 Sobic003G214900--Sobic003G100700 Sobic001G158300--Sobic006G272800 Sobic002G284100 Sobic002G284100 Sobic001G158300--Sobic002G284100 Sobic008G070700 Sobic008G070700 Sobic001G158300--Sobic008G070700 Sobic010G003300 Sobic010G003300 Sobic001G158300--Sobic010G003300 Sobic001G158300--Sobic001G468000 Sobic002G027600 Sobic002G027600 Sobic001G158300--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic001G158300--Sobic004G267600 Sobic001G158300--Sobic002G196500 Sobic010G237800 Sobic010G237800 Sobic001G158300--Sobic010G237800 Sobic010G212700--Sobic001G171100 Sobic010G212700--Sobic001G468000 Sobic010G212700--Sobic003G022900 Sobic010G212700--Sobic006G066400 Sobic010G212700--Sobic010G180200 Sobic010G212700--Sobic002G196500 Sobic004G218000 Sobic004G218000 Sobic010G212700--Sobic004G218000 Sobic002G374200 Sobic002G374200 Sobic010G212700--Sobic002G374200 Sobic004G014100 Sobic004G014100 Sobic010G212700--Sobic004G014100 Sobic005G143100--Sobic002G284100 Sobic009G172950 Sobic009G172950 Sobic005G143100--Sobic009G172950 Sobic005G143100--Sobic001G123100 Sobic004G321400 Sobic004G321400 Sobic005G143100--Sobic004G321400 Sobic002G006100 Sobic002G006100 Sobic005G143100--Sobic002G006100 Sobic005G143100--Sobic004G267600 Sobic003G289800 Sobic003G289800 Sobic005G143100--Sobic003G289800 Sobic003G226700 Sobic003G226700 Sobic005G143100--Sobic003G226700 Sobic006G142500 Sobic006G142500 Sobic005G143100--Sobic006G142500 Sobic001G468000--Sobic006G066400 Sobic001G468000--Sobic010G212700 Sobic001G468000--Sobic006G272800 Sobic001G468000--Sobic002G196500 Sobic001G468000--Sobic002G284100 Sobic001G468000--Sobic001G158300 Sobic001G468000--Sobic010G180200 Sobic002G302600 Sobic002G302600 Sobic001G468000--Sobic002G302600 Sobic001G468000--Sobic001G171100 Sobic002G341700 Sobic002G341700 Sobic007G018500--Sobic002G341700 Sobic001G033300 Sobic001G033300 Sobic007G018500--Sobic001G033300 Sobic007G084200 Sobic007G084200 Sobic007G018500--Sobic007G084200 Sobic001G201000 Sobic001G201000 Sobic007G018500--Sobic001G201000 Sobic005G156100 Sobic005G156100 Sobic007G018500--Sobic005G156100 Sobic008G052000 Sobic008G052000 Sobic007G018500--Sobic008G052000 Sobic006G236800 Sobic006G236800 Sobic007G018500--Sobic006G236800 Sobic009G099150 Sobic009G099150 Sobic007G018500--Sobic009G099150 Sobic001G487200 Sobic001G487200 Sobic007G018500--Sobic001G487200 Sobic002G244600--Sobic006G066400 Sobic001G051100 Sobic001G051100 Sobic002G244600--Sobic001G051100 Sobic002G244600--Sobic001G158300 Sobic002G244600--Sobic010G180200 Sobic002G244600--Sobic010G212700 Sobic002G244600--Sobic003G022900 Sobic002G244600--Sobic001G468000 Sobic009G243000 Sobic009G243000 Sobic002G244600--Sobic009G243000 Sobic001G128200 Sobic001G128200 Sobic002G244600--Sobic001G128200 Sobic001G399600--Sobic010G180200 Sobic006G140300 Sobic006G140300 Sobic001G399600--Sobic006G140300 Sobic007G167300 Sobic007G167300 Sobic001G399600--Sobic007G167300 Sobic001G399600--Sobic004G014100 Sobic001G399600--Sobic009G254000 Sobic001G399600--Sobic010G237800 Sobic006G143300 Sobic006G143300 Sobic001G399600--Sobic006G143300 Sobic003G363300 Sobic003G363300 Sobic001G399600--Sobic003G363300 Sobic008G176300 Sobic008G176300 Sobic001G399600--Sobic008G176300
Octagon: transcription factors


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