Gene annotation
Transcriptome id Sobic.002G408400.1
Synonym BMY3, BAM9, Sb02g042220
Functional annotation beta-amylase, putative, expressed
UniProt C5X4V1
Pfam PF01373
Panther DB PTHR31352 PTHR31352:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT5G18670 : beta-amylase 3
RAP-DB (Rice) LOC_Os07g47120.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a052378 , Zm00025a049081 , Zm00025a002470
Brachypodium KQK14751 , KQJ97853
Barley HORVU1Hr1G055140.1 , HORVU1Hr1G055140.2 , HORVU2Hr1G020970.2 , HORVU2Hr1G020970.3 , HORVU2Hr1G020970.1 , HORVU2Hr1G020970.6 , HORVU2Hr1G020970.7 , HORVU2Hr1G020970.4 , HORVU2Hr1G020970.5
Wheat TraesCS2A02G120800 , TraesCS1A02G215500 , TraesCS1D02G218000 , TraesCS2B02G141700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G104900 - -
2 Sobic.003G370800 aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
3 Sobic.008G057200 amino acid transporter, putative, expressed -
4 Sobic.007G009900 - -
5 Sobic.010G103400 MBTB10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
6 Sobic.003G384750 - -
7 Sobic.009G143600 clathrin assembly protein, putative, expressed -
8 Sobic.009G212900 myosin head family protein, expressed K10357: myosin V
9 Sobic.006G244200 OsFBDUF42 - F-box and DUF domain containing protein, expressed -
10 Sobic.003G394000 - -
11 Sobic.001G057900 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
12 Sobic.001G336450 - -
13 Sobic.001G486800 AP2 domain containing protein, expressed -
14 Sobic.004G200100 leucine-rich repeat family protein, putative, expressed -
15 Sobic.001G123400 expressed protein -
16 Sobic.003G074300 expressed protein -
17 Sobic.004G145550 - -
18 Sobic.009G174800 thioredoxin, putative, expressed K03671: thioredoxin 1
19 Sobic.007G070100 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
20 Sobic.002G027901 - K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic002G408400 Sobic002G408400 Sobic008G104900 Sobic008G104900 Sobic002G408400--Sobic008G104900 Sobic003G370800 Sobic003G370800 Sobic002G408400--Sobic003G370800 Sobic008G057200 Sobic008G057200 Sobic002G408400--Sobic008G057200 Sobic007G009900 Sobic007G009900 Sobic002G408400--Sobic007G009900 Sobic010G103400 Sobic010G103400 Sobic002G408400--Sobic010G103400 Sobic003G384750 Sobic003G384750 Sobic002G408400--Sobic003G384750 Sobic009G143600 Sobic009G143600 Sobic002G408400--Sobic009G143600 Sobic009G212900 Sobic009G212900 Sobic002G408400--Sobic009G212900 Sobic006G244200 Sobic006G244200 Sobic002G408400--Sobic006G244200 Sobic008G104900--Sobic002G408400 Sobic008G104900--Sobic010G103400 Sobic008G104900--Sobic003G370800 Sobic008G104900--Sobic007G009900 Sobic008G104900--Sobic008G057200 Sobic005G077600 Sobic005G077600 Sobic008G104900--Sobic005G077600 Sobic007G019700 Sobic007G019700 Sobic008G104900--Sobic007G019700 Sobic003G394000 Sobic003G394000 Sobic008G104900--Sobic003G394000 Sobic001G336450 Sobic001G336450 Sobic008G104900--Sobic001G336450 Sobic003G370800--Sobic002G408400 Sobic003G370800--Sobic008G104900 Sobic003G370800--Sobic009G212900 Sobic003G370800--Sobic009G143600 Sobic003G370800--Sobic007G009900 Sobic004G200100 Sobic004G200100 Sobic003G370800--Sobic004G200100 Sobic003G370800--Sobic003G394000 Sobic003G370800--Sobic003G384750 Sobic001G486800 Sobic001G486800 Sobic003G370800--Sobic001G486800 Sobic008G057200--Sobic010G103400 Sobic008G057200--Sobic002G408400 Sobic008G057200--Sobic008G104900 Sobic008G057200--Sobic007G009900 Sobic008G057200--Sobic003G384750 Sobic008G057200--Sobic003G370800 Sobic008G057200--Sobic003G394000 Sobic008G057200--Sobic009G212900 Sobic001G123400 Sobic001G123400 Sobic008G057200--Sobic001G123400 Sobic007G009900--Sobic010G103400 Sobic007G009900--Sobic008G104900 Sobic007G009900--Sobic001G123400 Sobic007G009900--Sobic002G408400 Sobic007G009900--Sobic003G370800 Sobic007G009900--Sobic001G486800 Sobic007G009900--Sobic009G212900 Sobic007G009900--Sobic008G057200 Sobic007G009900--Sobic004G200100 Sobic010G103400--Sobic007G009900 Sobic010G103400--Sobic008G104900 Sobic010G103400--Sobic008G057200 Sobic010G103400--Sobic005G077600 Sobic010G103400--Sobic002G408400 Sobic004G355900 Sobic004G355900 Sobic010G103400--Sobic004G355900 Sobic002G255800 Sobic002G255800 Sobic010G103400--Sobic002G255800 Sobic010G103400--Sobic007G019700 Sobic007G057201 Sobic007G057201 Sobic010G103400--Sobic007G057201 Sobic009G174800 Sobic009G174800 Sobic003G384750--Sobic009G174800 Sobic003G384750--Sobic002G408400 Sobic004G145550 Sobic004G145550 Sobic003G384750--Sobic004G145550 Sobic003G384750--Sobic006G244200 Sobic007G160050 Sobic007G160050 Sobic003G384750--Sobic007G160050 Sobic003G384750--Sobic008G057200 Sobic003G384750--Sobic003G370800 Sobic003G384750--Sobic009G143600 Sobic001G159500 Sobic001G159500 Sobic003G384750--Sobic001G159500 Sobic009G143600--Sobic006G244200 Sobic009G143600--Sobic003G370800 Sobic009G143600--Sobic009G212900 Sobic009G143600--Sobic002G408400 Sobic009G143600--Sobic004G145550 Sobic009G143600--Sobic003G384750 Sobic009G143600--Sobic007G009900 Sobic003G106800 Sobic003G106800 Sobic009G143600--Sobic003G106800 Sobic009G143600--Sobic001G123400 Sobic009G212900--Sobic003G370800 Sobic009G212900--Sobic007G009900 Sobic009G212900--Sobic009G143600 Sobic009G212900--Sobic001G123400 Sobic009G212900--Sobic004G200100 Sobic009G212900--Sobic003G106800 Sobic004G327900 Sobic004G327900 Sobic009G212900--Sobic004G327900 Sobic009G212900--Sobic002G408400 Sobic005G106700 Sobic005G106700 Sobic009G212900--Sobic005G106700 Sobic006G244200--Sobic004G145550 Sobic006G244200--Sobic009G143600 Sobic006G244200--Sobic003G384750 Sobic001G520600 Sobic001G520600 Sobic006G244200--Sobic001G520600 Sobic010G093200 Sobic010G093200 Sobic006G244200--Sobic010G093200 Sobic002G375200 Sobic002G375200 Sobic006G244200--Sobic002G375200 Sobic007G113101 Sobic007G113101 Sobic006G244200--Sobic007G113101 Sobic006G252800 Sobic006G252800 Sobic006G244200--Sobic006G252800 Sobic006G244200--Sobic002G408400
Octagon: transcription factors


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