Gene annotation
Transcriptome id Sobic.002G419700.1
Synonym Sb02g043140, CML42
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsCML32 - Calmodulin-related calcium sensor protein, expressed
UniProt C5X5N4
Pfam PF13499 PF13405
Panther DB PTHR10891 PTHR10891:SF589
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT4G20780 : calmodulin like 42
RAP-DB (Rice) LOC_Os08g04890.1 : OsCML32 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a049176 , Zm00025a015452
Brachypodium KQK02910
Barley HORVU7Hr1G072770.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G419700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G111750 - -
2 Sobic.001G500500 expressed protein -
3 Sobic.004G031501 - -
4 Sobic.008G188800 ankyrin repeat domain-containing protein, putative, expressed -
5 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
6 Sobic.007G146200 pectinesterase, putative, expressed K01051: pectinesterase
7 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.001G134500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@class I glutamine amidotransferase, putative, expressed -
9 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
10 Sobic.003G072700 expressed protein -
11 Sobic.006G152700 - -
12 Sobic.003G006000 expressed protein -
13 Sobic.007G012600 - -
14 Sobic.008G047600 expressed protein -
15 Sobic.009G125800 expressed protein -
16 Sobic.002G120800 subtilisin N-terminal Region family protein, expressed -
17 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
18 Sobic.003G335300 E2F-related protein, putative, expressed -
19 Sobic.009G158000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@growth regulator related protein, putative, expressed -
20 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G419700 Sobic002G419700 Sobic010G111750 Sobic010G111750 Sobic002G419700--Sobic010G111750 Sobic001G500500 Sobic001G500500 Sobic002G419700--Sobic001G500500 Sobic004G031501 Sobic004G031501 Sobic002G419700--Sobic004G031501 Sobic008G188800 Sobic008G188800 Sobic002G419700--Sobic008G188800 Sobic002G178800 Sobic002G178800 Sobic002G419700--Sobic002G178800 Sobic007G146200 Sobic007G146200 Sobic002G419700--Sobic007G146200 Sobic003G091300 Sobic003G091300 Sobic002G419700--Sobic003G091300 Sobic001G134500 Sobic001G134500 Sobic002G419700--Sobic001G134500 Sobic002G178700 Sobic002G178700 Sobic002G419700--Sobic002G178700 Sobic010G111750--Sobic003G091300 Sobic010G111750--Sobic002G178700 Sobic003G006000 Sobic003G006000 Sobic010G111750--Sobic003G006000 Sobic002G258000 Sobic002G258000 Sobic010G111750--Sobic002G258000 Sobic001G419500 Sobic001G419500 Sobic010G111750--Sobic001G419500 Sobic001G137500 Sobic001G137500 Sobic010G111750--Sobic001G137500 Sobic010G111750--Sobic004G031501 Sobic002G078900 Sobic002G078900 Sobic010G111750--Sobic002G078900 Sobic007G012600 Sobic007G012600 Sobic010G111750--Sobic007G012600 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G288000 Sobic001G288000 Sobic001G500500--Sobic001G288000 Sobic008G098700 Sobic008G098700 Sobic001G500500--Sobic008G098700 Sobic010G243100 Sobic010G243100 Sobic001G500500--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic001G500500--Sobic003G289700 Sobic006G215800 Sobic006G215800 Sobic001G500500--Sobic006G215800 Sobic002G374200 Sobic002G374200 Sobic001G500500--Sobic002G374200 Sobic002G299200 Sobic002G299200 Sobic001G500500--Sobic002G299200 Sobic004G313400 Sobic004G313400 Sobic001G500500--Sobic004G313400 Sobic004G031501--Sobic010G111750 Sobic004G031501--Sobic003G091300 Sobic004G031501--Sobic002G178700 Sobic004G031501--Sobic003G006000 Sobic004G031501--Sobic001G137500 Sobic004G031501--Sobic008G188800 Sobic004G031501--Sobic001G288000 Sobic004G031501--Sobic002G258000 Sobic004G031501--Sobic007G012600 Sobic008G188800--Sobic007G146200 Sobic005G008850 Sobic005G008850 Sobic008G188800--Sobic005G008850 Sobic006G152700 Sobic006G152700 Sobic008G188800--Sobic006G152700 Sobic009G125800 Sobic009G125800 Sobic008G188800--Sobic009G125800 Sobic008G140600 Sobic008G140600 Sobic008G188800--Sobic008G140600 Sobic003G377300 Sobic003G377300 Sobic008G188800--Sobic003G377300 Sobic002G322700 Sobic002G322700 Sobic008G188800--Sobic002G322700 Sobic003G072700 Sobic003G072700 Sobic008G188800--Sobic003G072700 Sobic010G009700 Sobic010G009700 Sobic008G188800--Sobic010G009700 Sobic002G178800--Sobic002G078900 Sobic010G048600 Sobic010G048600 Sobic002G178800--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic002G178800--Sobic001G459400 Sobic002G178800--Sobic002G178700 Sobic001G459300 Sobic001G459300 Sobic002G178800--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic002G178800--Sobic001G106500 Sobic003G092300 Sobic003G092300 Sobic002G178800--Sobic003G092300 Sobic002G178800--Sobic003G006000 Sobic001G456000 Sobic001G456000 Sobic002G178800--Sobic001G456000 Sobic007G146200--Sobic002G322700 Sobic007G146200--Sobic008G188800 Sobic007G146200--Sobic003G072700 Sobic007G146200--Sobic010G009700 Sobic007G146200--Sobic009G125800 Sobic007G146200--Sobic006G152700 Sobic005G045800 Sobic005G045800 Sobic007G146200--Sobic005G045800 Sobic007G141600 Sobic007G141600 Sobic007G146200--Sobic007G141600 Sobic007G146200--Sobic008G140600 Sobic003G091300--Sobic010G111750 Sobic003G091300--Sobic001G288000 Sobic003G091300--Sobic002G178700 Sobic003G091300--Sobic001G137500 Sobic003G091300--Sobic003G006000 Sobic003G091300--Sobic002G258000 Sobic003G091300--Sobic001G419500 Sobic002G205000 Sobic002G205000 Sobic003G091300--Sobic002G205000 Sobic003G091300--Sobic004G031501 Sobic001G134500--Sobic002G374200 Sobic001G134500--Sobic002G419700 Sobic004G014300 Sobic004G014300 Sobic001G134500--Sobic004G014300 Sobic001G051100 Sobic001G051100 Sobic001G134500--Sobic001G051100 Sobic009G232500 Sobic009G232500 Sobic001G134500--Sobic009G232500 Sobic002G037600 Sobic002G037600 Sobic001G134500--Sobic002G037600 Sobic007G069600 Sobic007G069600 Sobic001G134500--Sobic007G069600 Sobic007G081900 Sobic007G081900 Sobic001G134500--Sobic007G081900 Sobic009G187600 Sobic009G187600 Sobic001G134500--Sobic009G187600 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic003G088600 Sobic003G088600 Sobic002G178700--Sobic003G088600 Sobic009G063700 Sobic009G063700 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic003G300000 Sobic003G300000 Sobic002G178700--Sobic003G300000
Octagon: transcription factors


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