Gene annotation
Transcriptome id Sobic.001G134500.1
Synonym Sb01g011750
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
class I glutamine amidotransferase, putative, expressed
UniProt C5WPK6
Pfam PF00117
Panther DB PTHR11922:SF42 PTHR11922
NCBI CDD KOG3179; Predicted glutamine synthetase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23970 : Class I glutamine amidotransferase-like superfamily protein
RAP-DB (Rice) LOC_Os03g48060.1 : class I glutamine amidotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a017095 , Zm00025a007636
Brachypodium KQK13750
Barley HORVU4Hr1G004260.6 , HORVU4Hr1G004260.7 , HORVU4Hr1G004260.4 , HORVU4Hr1G004260.5 , HORVU4Hr1G004260.2 , HORVU4Hr1G004260.3 , HORVU4Hr1G004260.1
Wheat TraesCS4A02G284400 , TraesCS4A02G284400 , TraesCS4D02G026300 , TraesCS4B02G028700
Populus -


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cDNA sequences
Sobic.001G134500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G374200 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
2 Sobic.002G419700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML32 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.004G014300 THION20 - Plant thionin family protein precursor, putative, expressed -
4 Sobic.001G051100 uncharacterized PE-PGRS family protein PE_PGRS3 precursor, putative, expressed -
5 Sobic.009G232500 expressed protein -
6 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.007G069600 bromodomain containing protein, expressed -
8 Sobic.007G081900 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
9 Sobic.009G187600 methyltransferase domain containing protein, expressed -
10 Sobic.003G410200 ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed K04649: HIP2, ubiquitin-conjugating enzyme (huntingtin interacting protein 2)
11 Sobic.002G178800 ubiquitin fusion protein, putative, expressed K02927: RP-L40e, RPL40, ubiquitin-large subunit ribosomal protein L40e
12 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.010G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G500500 expressed protein -
15 Sobic.002G201500 GASR10 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
16 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.001G196800 CAMK_CAMK_like.40 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
18 Sobic.005G032400 ASH-like SPRY domain containing protein, putative, expressed K14964: Set1/Ash2 histone methyltransferase complex subunit ASH2
19 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
20 Sobic.010G239400 oryzain beta chain precursor, putative, expressed -


Gene co-expression network
sample Sobic001G134500 Sobic001G134500 Sobic002G374200 Sobic002G374200 Sobic001G134500--Sobic002G374200 Sobic002G419700 Sobic002G419700 Sobic001G134500--Sobic002G419700 Sobic004G014300 Sobic004G014300 Sobic001G134500--Sobic004G014300 Sobic001G051100 Sobic001G051100 Sobic001G134500--Sobic001G051100 Sobic009G232500 Sobic009G232500 Sobic001G134500--Sobic009G232500 Sobic002G037600 Sobic002G037600 Sobic001G134500--Sobic002G037600 Sobic007G069600 Sobic007G069600 Sobic001G134500--Sobic007G069600 Sobic007G081900 Sobic007G081900 Sobic001G134500--Sobic007G081900 Sobic009G187600 Sobic009G187600 Sobic001G134500--Sobic009G187600 Sobic010G212700 Sobic010G212700 Sobic002G374200--Sobic010G212700 Sobic001G500500 Sobic001G500500 Sobic002G374200--Sobic001G500500 Sobic010G237800 Sobic010G237800 Sobic002G374200--Sobic010G237800 Sobic003G007200 Sobic003G007200 Sobic002G374200--Sobic003G007200 Sobic007G153700 Sobic007G153700 Sobic002G374200--Sobic007G153700 Sobic005G160200 Sobic005G160200 Sobic002G374200--Sobic005G160200 Sobic002G374200--Sobic009G232500 Sobic003G410200 Sobic003G410200 Sobic002G374200--Sobic003G410200 Sobic002G196500 Sobic002G196500 Sobic002G374200--Sobic002G196500 Sobic010G111750 Sobic010G111750 Sobic002G419700--Sobic010G111750 Sobic002G419700--Sobic001G500500 Sobic004G031501 Sobic004G031501 Sobic002G419700--Sobic004G031501 Sobic008G188800 Sobic008G188800 Sobic002G419700--Sobic008G188800 Sobic002G178800 Sobic002G178800 Sobic002G419700--Sobic002G178800 Sobic007G146200 Sobic007G146200 Sobic002G419700--Sobic007G146200 Sobic003G091300 Sobic003G091300 Sobic002G419700--Sobic003G091300 Sobic002G419700--Sobic001G134500 Sobic002G178700 Sobic002G178700 Sobic002G419700--Sobic002G178700 Sobic008G070200 Sobic008G070200 Sobic004G014300--Sobic008G070200 Sobic009G154400 Sobic009G154400 Sobic004G014300--Sobic009G154400 Sobic004G028700 Sobic004G028700 Sobic004G014300--Sobic004G028700 Sobic003G402100 Sobic003G402100 Sobic004G014300--Sobic003G402100 Sobic001G394100 Sobic001G394100 Sobic004G014300--Sobic001G394100 Sobic009G227201 Sobic009G227201 Sobic004G014300--Sobic009G227201 Sobic001G053700 Sobic001G053700 Sobic004G014300--Sobic001G053700 Sobic007G084800 Sobic007G084800 Sobic004G014300--Sobic007G084800 Sobic008G186700 Sobic008G186700 Sobic004G014300--Sobic008G186700 Sobic002G244600 Sobic002G244600 Sobic001G051100--Sobic002G244600 Sobic010G180200 Sobic010G180200 Sobic001G051100--Sobic010G180200 Sobic006G066400 Sobic006G066400 Sobic001G051100--Sobic006G066400 Sobic001G132200 Sobic001G132200 Sobic001G051100--Sobic001G132200 Sobic004G218000 Sobic004G218000 Sobic001G051100--Sobic004G218000 Sobic002G122000 Sobic002G122000 Sobic001G051100--Sobic002G122000 Sobic002G061800 Sobic002G061800 Sobic001G051100--Sobic002G061800 Sobic009G042600 Sobic009G042600 Sobic001G051100--Sobic009G042600 Sobic001G051100--Sobic001G053700 Sobic009G232500--Sobic003G410200 Sobic001G107300 Sobic001G107300 Sobic009G232500--Sobic001G107300 Sobic003G109200 Sobic003G109200 Sobic009G232500--Sobic003G109200 Sobic009G232500--Sobic002G374200 Sobic006G181700 Sobic006G181700 Sobic009G232500--Sobic006G181700 Sobic001G478700 Sobic001G478700 Sobic009G232500--Sobic001G478700 Sobic007G010200 Sobic007G010200 Sobic009G232500--Sobic007G010200 Sobic001G239100 Sobic001G239100 Sobic009G232500--Sobic001G239100 Sobic007G031100 Sobic007G031100 Sobic009G232500--Sobic007G031100 Sobic001G196800 Sobic001G196800 Sobic002G037600--Sobic001G196800 Sobic003G294900 Sobic003G294900 Sobic002G037600--Sobic003G294900 Sobic001G203800 Sobic001G203800 Sobic002G037600--Sobic001G203800 Sobic006G208200 Sobic006G208200 Sobic002G037600--Sobic006G208200 Sobic004G328100 Sobic004G328100 Sobic002G037600--Sobic004G328100 Sobic006G272300 Sobic006G272300 Sobic002G037600--Sobic006G272300 Sobic001G309200 Sobic001G309200 Sobic002G037600--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic002G037600--Sobic005G185200 Sobic003G270100 Sobic003G270100 Sobic002G037600--Sobic003G270100 Sobic001G288000 Sobic001G288000 Sobic007G069600--Sobic001G288000 Sobic006G215800 Sobic006G215800 Sobic007G069600--Sobic006G215800 Sobic003G032400 Sobic003G032400 Sobic007G069600--Sobic003G032400 Sobic004G054700 Sobic004G054700 Sobic007G069600--Sobic004G054700 Sobic007G069600--Sobic002G374200 Sobic004G337300 Sobic004G337300 Sobic007G069600--Sobic004G337300 Sobic003G122400 Sobic003G122400 Sobic007G069600--Sobic003G122400 Sobic007G069600--Sobic007G081900 Sobic010G041100 Sobic010G041100 Sobic007G069600--Sobic010G041100 Sobic003G006200 Sobic003G006200 Sobic007G081900--Sobic003G006200 Sobic002G267400 Sobic002G267400 Sobic007G081900--Sobic002G267400 Sobic010G235700 Sobic010G235700 Sobic007G081900--Sobic010G235700 Sobic004G207100 Sobic004G207100 Sobic007G081900--Sobic004G207100 Sobic004G320100 Sobic004G320100 Sobic007G081900--Sobic004G320100 Sobic007G081900--Sobic002G374200 Sobic003G004600 Sobic003G004600 Sobic007G081900--Sobic003G004600 Sobic010G154000 Sobic010G154000 Sobic007G081900--Sobic010G154000 Sobic008G160500 Sobic008G160500 Sobic007G081900--Sobic008G160500 Sobic006G094500 Sobic006G094500 Sobic009G187600--Sobic006G094500 Sobic003G348200 Sobic003G348200 Sobic009G187600--Sobic003G348200 Sobic010G185100 Sobic010G185100 Sobic009G187600--Sobic010G185100 Sobic009G218000 Sobic009G218000 Sobic009G187600--Sobic009G218000 Sobic009G187600--Sobic007G010200 Sobic001G188700 Sobic001G188700 Sobic009G187600--Sobic001G188700 Sobic002G422400 Sobic002G422400 Sobic009G187600--Sobic002G422400 Sobic009G187600--Sobic007G031100 Sobic005G044100 Sobic005G044100 Sobic009G187600--Sobic005G044100
Octagon: transcription factors


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