Gene annotation
Transcriptome id Sobic.003G006200.2,Sobic.003G006200.1
Synonym Sb03g000730
Functional annotation ubiquitin-conjugating enzyme E2, putative, expressed
UniProt A0A1W0VV92 , A0A1B6Q0M2
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF130
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53025 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os01g13170.1 : ubiquitin-conjugating enzyme E2, putative, expressed
MaizeGDB (Corn) Zm00025a022811 , Zm00025a035997
Brachypodium -
Barley HORVU3Hr1G031730.11 , HORVU3Hr1G031730.10 , HORVU3Hr1G031730.9 , HORVU3Hr1G031730.8 , HORVU3Hr1G031730.7 , HORVU3Hr1G031730.6 , HORVU3Hr1G031730.5 , HORVU3Hr1G031730.4 , HORVU3Hr1G031730.3 , HORVU3Hr1G031730.2 , HORVU3Hr1G031730.1
Wheat TraesCS3B02G183000 , TraesCS3D02G164200 , TraesCS3A02G156300
Populus -


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cDNA sequences
Sobic.003G006200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G081900 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
2 Sobic.004G337300 expressed protein -
3 Sobic.008G058800 OsFBX369 - F-box domain containing protein, expressed -
4 Sobic.009G125000 cyclin-dependent kinase C-1, putative, expressed K08819: cyclin-dependent kinase 12/13
5 Sobic.003G212900 zinc ion binding protein, putative, expressed -
6 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
7 Sobic.006G219000 OsFBW1 - F-box domain and WD40 repeat containing protein, expressed -
8 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
9 Sobic.009G059400 expressed protein -
10 Sobic.001G492200 OsFBK11 - F-box domain and kelch repeat containing protein, expressed -
11 Sobic.007G189000 WTG1(Ortholog in rice:Wang et al. (2017))(PubMedID : 31659909)@ubiquitin thioesterase otubain-like, putative, expressed K09602: ubiquitin thioesterase protein OTUB1
12 Sobic.001G152700 expressed protein -
13 Sobic.009G160600 Yip1 domain containing protein, expressed -
14 Sobic.004G320100 expressed protein -
15 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
16 Sobic.001G061200 25.3 kDa vesicle transport protein, putative, expressed K08517: vesicle transport protein SEC22
17 Sobic.001G109500 OsFBX85 - F-box domain containing protein, expressed -
18 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
19 Sobic.009G017200 transporter family protein, putative, expressed K15276: SLC35B2, solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2
20 Sobic.007G148400 cyclin-dependent kinase C-3, putative, expressed K08819: cyclin-dependent kinase 12/13


Gene co-expression network
sample Sobic003G006200 Sobic003G006200 Sobic007G081900 Sobic007G081900 Sobic003G006200--Sobic007G081900 Sobic004G337300 Sobic004G337300 Sobic003G006200--Sobic004G337300 Sobic008G058800 Sobic008G058800 Sobic003G006200--Sobic008G058800 Sobic009G125000 Sobic009G125000 Sobic003G006200--Sobic009G125000 Sobic003G212900 Sobic003G212900 Sobic003G006200--Sobic003G212900 Sobic002G267400 Sobic002G267400 Sobic003G006200--Sobic002G267400 Sobic006G219000 Sobic006G219000 Sobic003G006200--Sobic006G219000 Sobic007G056500 Sobic007G056500 Sobic003G006200--Sobic007G056500 Sobic009G059400 Sobic009G059400 Sobic003G006200--Sobic009G059400 Sobic007G081900--Sobic003G006200 Sobic007G081900--Sobic002G267400 Sobic010G235700 Sobic010G235700 Sobic007G081900--Sobic010G235700 Sobic004G207100 Sobic004G207100 Sobic007G081900--Sobic004G207100 Sobic004G320100 Sobic004G320100 Sobic007G081900--Sobic004G320100 Sobic002G374200 Sobic002G374200 Sobic007G081900--Sobic002G374200 Sobic003G004600 Sobic003G004600 Sobic007G081900--Sobic003G004600 Sobic010G154000 Sobic010G154000 Sobic007G081900--Sobic010G154000 Sobic008G160500 Sobic008G160500 Sobic007G081900--Sobic008G160500 Sobic002G357900 Sobic002G357900 Sobic004G337300--Sobic002G357900 Sobic001G050400 Sobic001G050400 Sobic004G337300--Sobic001G050400 Sobic001G061200 Sobic001G061200 Sobic004G337300--Sobic001G061200 Sobic003G190600 Sobic003G190600 Sobic004G337300--Sobic003G190600 Sobic008G140400 Sobic008G140400 Sobic004G337300--Sobic008G140400 Sobic002G401700 Sobic002G401700 Sobic004G337300--Sobic002G401700 Sobic004G337300--Sobic003G006200 Sobic004G337300--Sobic002G267400 Sobic001G005600 Sobic001G005600 Sobic004G337300--Sobic001G005600 Sobic001G042200 Sobic001G042200 Sobic008G058800--Sobic001G042200 Sobic009G129600 Sobic009G129600 Sobic008G058800--Sobic009G129600 Sobic006G248500 Sobic006G248500 Sobic008G058800--Sobic006G248500 Sobic003G205501 Sobic003G205501 Sobic008G058800--Sobic003G205501 Sobic010G077500 Sobic010G077500 Sobic008G058800--Sobic010G077500 Sobic002G264200 Sobic002G264200 Sobic008G058800--Sobic002G264200 Sobic007G026000 Sobic007G026000 Sobic008G058800--Sobic007G026000 Sobic008G127400 Sobic008G127400 Sobic008G058800--Sobic008G127400 Sobic004G180900 Sobic004G180900 Sobic008G058800--Sobic004G180900 Sobic009G125000--Sobic009G059400 Sobic004G345400 Sobic004G345400 Sobic009G125000--Sobic004G345400 Sobic001G472100 Sobic001G472100 Sobic009G125000--Sobic001G472100 Sobic009G125000--Sobic004G180900 Sobic005G040900 Sobic005G040900 Sobic009G125000--Sobic005G040900 Sobic009G125000--Sobic001G042200 Sobic009G040800 Sobic009G040800 Sobic009G125000--Sobic009G040800 Sobic003G062400 Sobic003G062400 Sobic009G125000--Sobic003G062400 Sobic005G198200 Sobic005G198200 Sobic009G125000--Sobic005G198200 Sobic001G135500 Sobic001G135500 Sobic003G212900--Sobic001G135500 Sobic003G212900--Sobic010G077500 Sobic002G422100 Sobic002G422100 Sobic003G212900--Sobic002G422100 Sobic003G416700 Sobic003G416700 Sobic003G212900--Sobic003G416700 Sobic003G212900--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic003G212900--Sobic004G309900 Sobic006G224800 Sobic006G224800 Sobic003G212900--Sobic006G224800 Sobic003G212900--Sobic008G058800 Sobic002G295500 Sobic002G295500 Sobic003G212900--Sobic002G295500 Sobic003G148900 Sobic003G148900 Sobic002G267400--Sobic003G148900 Sobic002G059000 Sobic002G059000 Sobic002G267400--Sobic002G059000 Sobic002G267400--Sobic002G357900 Sobic007G192100 Sobic007G192100 Sobic002G267400--Sobic007G192100 Sobic001G036700 Sobic001G036700 Sobic002G267400--Sobic001G036700 Sobic008G111800 Sobic008G111800 Sobic002G267400--Sobic008G111800 Sobic002G267400--Sobic003G062400 Sobic004G256300 Sobic004G256300 Sobic002G267400--Sobic004G256300 Sobic002G267400--Sobic007G081900 Sobic003G121300 Sobic003G121300 Sobic006G219000--Sobic003G121300 Sobic009G207200 Sobic009G207200 Sobic006G219000--Sobic009G207200 Sobic007G189000 Sobic007G189000 Sobic006G219000--Sobic007G189000 Sobic001G484700 Sobic001G484700 Sobic006G219000--Sobic001G484700 Sobic001G507400 Sobic001G507400 Sobic006G219000--Sobic001G507400 Sobic001G294300 Sobic001G294300 Sobic006G219000--Sobic001G294300 Sobic001G216100 Sobic001G216100 Sobic006G219000--Sobic001G216100 Sobic010G068700 Sobic010G068700 Sobic006G219000--Sobic010G068700 Sobic006G121300 Sobic006G121300 Sobic006G219000--Sobic006G121300 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic007G056500--Sobic004G180900 Sobic001G395100 Sobic001G395100 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic007G056500--Sobic006G121300 Sobic009G017200 Sobic009G017200 Sobic009G059400--Sobic009G017200 Sobic009G059400--Sobic005G198200 Sobic007G218600 Sobic007G218600 Sobic009G059400--Sobic007G218600 Sobic006G144000 Sobic006G144000 Sobic009G059400--Sobic006G144000 Sobic003G393200 Sobic003G393200 Sobic009G059400--Sobic003G393200 Sobic009G059400--Sobic009G125000 Sobic009G059400--Sobic004G345400 Sobic007G148400 Sobic007G148400 Sobic009G059400--Sobic007G148400 Sobic006G224300 Sobic006G224300 Sobic009G059400--Sobic006G224300
Octagon: transcription factors


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