Gene annotation
Transcriptome id Sobic.003G181800.2,Sobic.003G181800.1
Synonym SnRK3.13, SbCIPK08, CBL-interacting protein kinases, PKS11, CIPK8, ATCIPK8
Functional annotation Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt C4P7U8 , A0A1B6Q433 , A0A1B6Q411
Pfam PF14531 PF03822 PF03822 PF07714
Panther DB PTHR24343 PTHR24343:SF157
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0006468protein phosphorylation GO:0004672protein kinase activity GO:0007165signal transduction


Orthologs (automatic annotation)
TAIR AT4G24400 : CBL-interacting protein kinase 8
RAP-DB (Rice) LOC_Os01g35184.1,LOC_Os01g35184.2 : CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a045015 , Zm00025a028830 , Zm00025a022744
Brachypodium KQK08213 , KQK08214
Barley -
Wheat TraesCS3B02G225800 , TraesCS3A02G200900 , TraesCS3D02G203000 , TraesCS3D02G203000 , TraesCS3D02G203000 , TraesCS3D02G203000 , TraesCS3D02G203000 , TraesCS3D02G203000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G252700 protein kinase domain containing protein, expressed -
2 Sobic.009G257800 sodium/calcium exchanger protein, putative, expressed K07300: chaA, Ca2+:H+ antiporter
3 Sobic.003G366500 transport protein particle component, Bet3, domain containing protein, expressed -
4 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
5 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
6 Sobic.004G240800 protein kinase domain containing protein, expressed -
7 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
9 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
10 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
11 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
12 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
13 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.006G278700 expressed protein -
15 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
16 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
17 Sobic.002G161800 Myb-like DNA-binding domain containing protein, putative, expressed -
18 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
19 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
20 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G181800 Sobic003G181800 Sobic006G252700 Sobic006G252700 Sobic003G181800--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic003G181800--Sobic009G257800 Sobic003G366500 Sobic003G366500 Sobic003G181800--Sobic003G366500 Sobic001G466700 Sobic001G466700 Sobic003G181800--Sobic001G466700 Sobic001G201400 Sobic001G201400 Sobic003G181800--Sobic001G201400 Sobic004G240800 Sobic004G240800 Sobic003G181800--Sobic004G240800 Sobic005G216300 Sobic005G216300 Sobic003G181800--Sobic005G216300 Sobic001G220300 Sobic001G220300 Sobic003G181800--Sobic001G220300 Sobic004G274200 Sobic004G274200 Sobic003G181800--Sobic004G274200 Sobic003G081000 Sobic003G081000 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic006G252700--Sobic004G350100 Sobic001G143500 Sobic001G143500 Sobic006G252700--Sobic001G143500 Sobic007G118200 Sobic007G118200 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic002G034600 Sobic002G034600 Sobic006G252700--Sobic002G034600 Sobic003G401000 Sobic003G401000 Sobic009G257800--Sobic003G401000 Sobic006G267300 Sobic006G267300 Sobic009G257800--Sobic006G267300 Sobic009G257800--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic009G257800--Sobic004G283000 Sobic004G057400 Sobic004G057400 Sobic009G257800--Sobic004G057400 Sobic002G090800 Sobic002G090800 Sobic009G257800--Sobic002G090800 Sobic009G257800--Sobic006G252700 Sobic004G325400 Sobic004G325400 Sobic009G257800--Sobic004G325400 Sobic001G090400 Sobic001G090400 Sobic009G257800--Sobic001G090400 Sobic003G153700 Sobic003G153700 Sobic003G366500--Sobic003G153700 Sobic001G221500 Sobic001G221500 Sobic003G366500--Sobic001G221500 Sobic003G366500--Sobic001G466700 Sobic004G274400 Sobic004G274400 Sobic003G366500--Sobic004G274400 Sobic001G260400 Sobic001G260400 Sobic003G366500--Sobic001G260400 Sobic007G183700 Sobic007G183700 Sobic003G366500--Sobic007G183700 Sobic006G249700 Sobic006G249700 Sobic003G366500--Sobic006G249700 Sobic007G026300 Sobic007G026300 Sobic003G366500--Sobic007G026300 Sobic003G366500--Sobic003G181800 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G466700--Sobic001G143500 Sobic002G388200 Sobic002G388200 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic004G021100 Sobic004G021100 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic001G466700--Sobic007G118200 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic003G187500 Sobic003G187500 Sobic001G201400--Sobic003G187500 Sobic008G131000 Sobic008G131000 Sobic001G201400--Sobic008G131000 Sobic001G201400--Sobic003G401100 Sobic010G053800 Sobic010G053800 Sobic001G201400--Sobic010G053800 Sobic001G201400--Sobic006G252700 Sobic001G201400--Sobic009G257800 Sobic001G201400--Sobic001G466700 Sobic001G413500 Sobic001G413500 Sobic004G240800--Sobic001G413500 Sobic009G083900 Sobic009G083900 Sobic004G240800--Sobic009G083900 Sobic001G497300 Sobic001G497300 Sobic004G240800--Sobic001G497300 Sobic002G133400 Sobic002G133400 Sobic004G240800--Sobic002G133400 Sobic005G023900 Sobic005G023900 Sobic004G240800--Sobic005G023900 Sobic004G145500 Sobic004G145500 Sobic004G240800--Sobic004G145500 Sobic004G240800--Sobic002G090800 Sobic004G240800--Sobic004G057400 Sobic002G157000 Sobic002G157000 Sobic004G240800--Sobic002G157000 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic004G146500 Sobic004G146500 Sobic001G220300--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic010G101800 Sobic010G101800 Sobic001G220300--Sobic010G101800 Sobic001G109800 Sobic001G109800 Sobic001G220300--Sobic001G109800 Sobic009G191000 Sobic009G191000 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic001G220300--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic001G220300--Sobic002G297200 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G274200--Sobic004G146500 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.