Gene annotation
Transcriptome id Sobic.003G207200.1
Synonym Sb03g026870
Functional annotation OsFBD2 - F-box and FBD domain containing protein, expressed
UniProt A0A1W0VY86
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF119
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G49150 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os01g41260.1 : OsFBD2 - F-box and FBD domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK08570 , KQK08569
Barley HORVU3Hr1G094100.1 , HORVU3Hr1G094100.3
Wheat TraesCS3B02G086300 , TraesCS3B02G086300 , TraesCS6B02G054600 , TraesCS4D02G117500 , TraesCS6B02G137400 , TraesCS5B02G058100 , TraesCS3A02G072000 , TraesCS3B02G501600 , TraesCS4A02G195800 , TraesCS3D02G071900 , TraesCS6A02G038800 , TraesCS6A02G038800 , TraesCS3D02G163600 , TraesCS4B02G119200 , TraesCS4B02G119200 , TraesCS6D02G097200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G239600 chloroplast unusual positioning protein, putative, expressed -
2 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
3 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
4 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
5 Sobic.007G065300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
6 Sobic.001G146301 - -
7 Sobic.001G081700 SWIB/MDM2 domain containing protein, expressed -
8 Sobic.010G080600 - -
9 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
10 Sobic.007G128100 expressed protein -
11 Sobic.009G129700 serine/threonine-protein kinase, putative, expressed -
12 Sobic.002G154300 serine/threonine-protein kinase receptor precursor, putative, expressed -
13 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
14 Sobic.005G007900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2c, putative, expressed -
15 Sobic.001G043500 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
16 Sobic.003G207300 OsFBD3 - F-box and FBD domain containing protein, expressed -
17 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.010G191100 helix-loop-helix DNA-binding, putative, expressed -
19 Sobic.004G078300 expressed protein -
20 Sobic.010G014500 aspartic protease, putative, expressed -


Gene co-expression network
sample Sobic003G207200 Sobic003G207200 Sobic003G239600 Sobic003G239600 Sobic003G207200--Sobic003G239600 Sobic005G111600 Sobic005G111600 Sobic003G207200--Sobic005G111600 Sobic004G343700 Sobic004G343700 Sobic003G207200--Sobic004G343700 Sobic001G298800 Sobic001G298800 Sobic003G207200--Sobic001G298800 Sobic007G065300 Sobic007G065300 Sobic003G207200--Sobic007G065300 Sobic001G146301 Sobic001G146301 Sobic003G207200--Sobic001G146301 Sobic001G081700 Sobic001G081700 Sobic003G207200--Sobic001G081700 Sobic010G080600 Sobic010G080600 Sobic003G207200--Sobic010G080600 Sobic008G038200 Sobic008G038200 Sobic003G207200--Sobic008G038200 Sobic010G078700 Sobic010G078700 Sobic003G239600--Sobic010G078700 Sobic010G246500 Sobic010G246500 Sobic003G239600--Sobic010G246500 Sobic003G298700 Sobic003G298700 Sobic003G239600--Sobic003G298700 Sobic009G070500 Sobic009G070500 Sobic003G239600--Sobic009G070500 Sobic007G165800 Sobic007G165800 Sobic003G239600--Sobic007G165800 Sobic001G199400 Sobic001G199400 Sobic003G239600--Sobic001G199400 Sobic006G058000 Sobic006G058000 Sobic003G239600--Sobic006G058000 Sobic006G228100 Sobic006G228100 Sobic003G239600--Sobic006G228100 Sobic010G077000 Sobic010G077000 Sobic003G239600--Sobic010G077000 Sobic009G070000 Sobic009G070000 Sobic005G111600--Sobic009G070000 Sobic008G137500 Sobic008G137500 Sobic005G111600--Sobic008G137500 Sobic003G047300 Sobic003G047300 Sobic005G111600--Sobic003G047300 Sobic006G271100 Sobic006G271100 Sobic005G111600--Sobic006G271100 Sobic009G229100 Sobic009G229100 Sobic005G111600--Sobic009G229100 Sobic005G111600--Sobic006G228100 Sobic002G408500 Sobic002G408500 Sobic005G111600--Sobic002G408500 Sobic002G206400 Sobic002G206400 Sobic005G111600--Sobic002G206400 Sobic004G296100 Sobic004G296100 Sobic005G111600--Sobic004G296100 Sobic003G373900 Sobic003G373900 Sobic004G343700--Sobic003G373900 Sobic004G246500 Sobic004G246500 Sobic004G343700--Sobic004G246500 Sobic003G019900 Sobic003G019900 Sobic004G343700--Sobic003G019900 Sobic001G271600 Sobic001G271600 Sobic004G343700--Sobic001G271600 Sobic010G185300 Sobic010G185300 Sobic004G343700--Sobic010G185300 Sobic010G269700 Sobic010G269700 Sobic004G343700--Sobic010G269700 Sobic004G234500 Sobic004G234500 Sobic004G343700--Sobic004G234500 Sobic006G274200 Sobic006G274200 Sobic004G343700--Sobic006G274200 Sobic007G147200 Sobic007G147200 Sobic004G343700--Sobic007G147200 Sobic009G129700 Sobic009G129700 Sobic001G298800--Sobic009G129700 Sobic005G104100 Sobic005G104100 Sobic001G298800--Sobic005G104100 Sobic005G156100 Sobic005G156100 Sobic001G298800--Sobic005G156100 Sobic001G298800--Sobic008G038200 Sobic001G298800--Sobic007G065300 Sobic001G074000 Sobic001G074000 Sobic001G298800--Sobic001G074000 Sobic007G128100 Sobic007G128100 Sobic001G298800--Sobic007G128100 Sobic001G522300 Sobic001G522300 Sobic001G298800--Sobic001G522300 Sobic006G093200 Sobic006G093200 Sobic001G298800--Sobic006G093200 Sobic007G065300--Sobic008G038200 Sobic007G032100 Sobic007G032100 Sobic007G065300--Sobic007G032100 Sobic007G065300--Sobic007G165800 Sobic002G098500 Sobic002G098500 Sobic007G065300--Sobic002G098500 Sobic001G434100 Sobic001G434100 Sobic007G065300--Sobic001G434100 Sobic010G020600 Sobic010G020600 Sobic007G065300--Sobic010G020600 Sobic001G221900 Sobic001G221900 Sobic007G065300--Sobic001G221900 Sobic009G235700 Sobic009G235700 Sobic007G065300--Sobic009G235700 Sobic007G065300--Sobic001G298800 Sobic003G177000 Sobic003G177000 Sobic001G146301--Sobic003G177000 Sobic007G159200 Sobic007G159200 Sobic001G146301--Sobic007G159200 Sobic002G425200 Sobic002G425200 Sobic001G146301--Sobic002G425200 Sobic001G146301--Sobic008G038200 Sobic001G300000 Sobic001G300000 Sobic001G146301--Sobic001G300000 Sobic004G118800 Sobic004G118800 Sobic001G146301--Sobic004G118800 Sobic001G146301--Sobic007G128100 Sobic003G311500 Sobic003G311500 Sobic001G146301--Sobic003G311500 Sobic007G161600 Sobic007G161600 Sobic001G146301--Sobic007G161600 Sobic001G081700--Sobic004G343700 Sobic004G190600 Sobic004G190600 Sobic001G081700--Sobic004G190600 Sobic001G374800 Sobic001G374800 Sobic001G081700--Sobic001G374800 Sobic001G534300 Sobic001G534300 Sobic001G081700--Sobic001G534300 Sobic008G113300 Sobic008G113300 Sobic001G081700--Sobic008G113300 Sobic007G162400 Sobic007G162400 Sobic001G081700--Sobic007G162400 Sobic001G105800 Sobic001G105800 Sobic001G081700--Sobic001G105800 Sobic001G081700--Sobic006G093200 Sobic002G341700 Sobic002G341700 Sobic001G081700--Sobic002G341700 Sobic003G218700 Sobic003G218700 Sobic010G080600--Sobic003G218700 Sobic010G038100 Sobic010G038100 Sobic010G080600--Sobic010G038100 Sobic007G171100 Sobic007G171100 Sobic010G080600--Sobic007G171100 Sobic004G010600 Sobic004G010600 Sobic010G080600--Sobic004G010600 Sobic002G364000 Sobic002G364000 Sobic010G080600--Sobic002G364000 Sobic004G078300 Sobic004G078300 Sobic010G080600--Sobic004G078300 Sobic006G275000 Sobic006G275000 Sobic010G080600--Sobic006G275000 Sobic010G262100 Sobic010G262100 Sobic010G080600--Sobic010G262100 Sobic001G507600 Sobic001G507600 Sobic010G080600--Sobic001G507600 Sobic008G038200--Sobic007G065300 Sobic008G038200--Sobic002G098500 Sobic008G038200--Sobic001G298800 Sobic003G096300 Sobic003G096300 Sobic008G038200--Sobic003G096300 Sobic001G518000 Sobic001G518000 Sobic008G038200--Sobic001G518000 Sobic006G241800 Sobic006G241800 Sobic008G038200--Sobic006G241800 Sobic008G038200--Sobic003G177000 Sobic010G135300 Sobic010G135300 Sobic008G038200--Sobic010G135300 Sobic008G038200--Sobic007G128100
Octagon: transcription factors


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