Gene annotation
Transcriptome id Sobic.003G219700.1
Synonym Sb03g027850
Functional annotation Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
transferase family protein, putative, expressed
UniProt C6JRY4 , A0A1B6Q4P7
Pfam PF02458
Panther DB PTHR31147 PTHR31147:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups


Orthologs (automatic annotation)
TAIR AT3G62160 : HXXXD-type acyl-transferase family protein
RAP-DB (Rice) LOC_Os01g42870.1 : transferase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038503
Brachypodium KQK08721
Barley HORVU3Hr1G054090.2 , HORVU3Hr1G054090.1 , HORVU4Hr1G000930.6 , HORVU4Hr1G000930.4 , HORVU4Hr1G000930.5 , HORVU4Hr1G000930.1 , HORVU3Hr1G096360.3 , HORVU3Hr1G096360.2 , HORVU3Hr1G096360.1 , HORVU4Hr1G000930.2
Wheat TraesCS3D02G231700 , TraesCS3D02G231700 , TraesCS4D02G001500 , TraesCS3A02G220800 , TraesCS3A02G238900 , TraesCS3B02G251100 , TraesCS4B02G001500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G219700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
2 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
3 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
4 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
5 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
6 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
7 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
8 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
9 Sobic.002G128800 fiber protein Fb34, putative, expressed -
10 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
11 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
12 Sobic.009G054800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
13 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
14 Sobic.002G294000 purine permease, putative, expressed -
15 Sobic.001G432000 LYR motif containing protein, putative, expressed -
16 Sobic.003G125650 - K02183: calmodulin
17 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
18 Sobic.006G159100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.001G111000 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
20 Sobic.010G206200 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e


Gene co-expression network
sample Sobic003G219700 Sobic003G219700 Sobic003G078200 Sobic003G078200 Sobic003G219700--Sobic003G078200 Sobic003G150000 Sobic003G150000 Sobic003G219700--Sobic003G150000 Sobic010G054200 Sobic010G054200 Sobic003G219700--Sobic010G054200 Sobic006G191800 Sobic006G191800 Sobic003G219700--Sobic006G191800 Sobic010G076400 Sobic010G076400 Sobic003G219700--Sobic010G076400 Sobic003G160700 Sobic003G160700 Sobic003G219700--Sobic003G160700 Sobic001G295200 Sobic001G295200 Sobic003G219700--Sobic001G295200 Sobic005G113300 Sobic005G113300 Sobic003G219700--Sobic005G113300 Sobic002G128800 Sobic002G128800 Sobic003G219700--Sobic002G128800 Sobic002G372400 Sobic002G372400 Sobic003G078200--Sobic002G372400 Sobic009G054800 Sobic009G054800 Sobic003G078200--Sobic009G054800 Sobic010G206200 Sobic010G206200 Sobic003G078200--Sobic010G206200 Sobic005G019700 Sobic005G019700 Sobic003G078200--Sobic005G019700 Sobic007G197800 Sobic007G197800 Sobic003G078200--Sobic007G197800 Sobic007G018300 Sobic007G018300 Sobic003G078200--Sobic007G018300 Sobic009G050300 Sobic009G050300 Sobic003G078200--Sobic009G050300 Sobic001G018900 Sobic001G018900 Sobic003G078200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic003G078200--Sobic006G116700 Sobic005G110800 Sobic005G110800 Sobic003G150000--Sobic005G110800 Sobic010G204500 Sobic010G204500 Sobic003G150000--Sobic010G204500 Sobic003G249700 Sobic003G249700 Sobic003G150000--Sobic003G249700 Sobic001G493001 Sobic001G493001 Sobic003G150000--Sobic001G493001 Sobic001G403500 Sobic001G403500 Sobic003G150000--Sobic001G403500 Sobic001G054900 Sobic001G054900 Sobic003G150000--Sobic001G054900 Sobic003G150000--Sobic009G050300 Sobic003G150000--Sobic005G019700 Sobic009G163800 Sobic009G163800 Sobic003G150000--Sobic009G163800 Sobic006G081100 Sobic006G081100 Sobic010G054200--Sobic006G081100 Sobic010G054200--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic003G129800 Sobic003G129800 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic010G054200--Sobic003G150000 Sobic010G054200--Sobic002G372400 Sobic010G221300 Sobic010G221300 Sobic006G191800--Sobic010G221300 Sobic001G529400 Sobic001G529400 Sobic006G191800--Sobic001G529400 Sobic010G047100 Sobic010G047100 Sobic006G191800--Sobic010G047100 Sobic001G361600 Sobic001G361600 Sobic006G191800--Sobic001G361600 Sobic003G125650 Sobic003G125650 Sobic006G191800--Sobic003G125650 Sobic001G313200 Sobic001G313200 Sobic006G191800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic006G191800--Sobic002G389400 Sobic006G191800--Sobic001G295200 Sobic006G191800--Sobic003G160700 Sobic010G076400--Sobic002G372400 Sobic010G076400--Sobic009G223300 Sobic010G076400--Sobic003G078200 Sobic010G076400--Sobic009G054800 Sobic009G173500 Sobic009G173500 Sobic010G076400--Sobic009G173500 Sobic010G076400--Sobic009G233400 Sobic003G109600 Sobic003G109600 Sobic010G076400--Sobic003G109600 Sobic004G198400 Sobic004G198400 Sobic010G076400--Sobic004G198400 Sobic002G379500 Sobic002G379500 Sobic010G076400--Sobic002G379500 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G160700--Sobic003G125650 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic004G220000 Sobic004G220000 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700 Sobic006G141700 Sobic006G141700 Sobic001G295200--Sobic006G141700 Sobic001G295200--Sobic001G018900 Sobic001G295200--Sobic006G116700 Sobic001G295200--Sobic001G361600 Sobic001G295200--Sobic005G113300 Sobic001G295200--Sobic003G078200 Sobic001G036900 Sobic001G036900 Sobic001G295200--Sobic001G036900 Sobic001G295200--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic001G295200--Sobic009G215200 Sobic005G113300--Sobic004G220000 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic005G113300--Sobic006G116700 Sobic005G113300--Sobic001G018900 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic005G113300--Sobic002G379500 Sobic005G113300--Sobic003G160700 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic001G418100 Sobic001G418100 Sobic002G128800--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G128800--Sobic002G396400 Sobic002G128800--Sobic001G475500 Sobic010G052200 Sobic010G052200 Sobic002G128800--Sobic010G052200 Sobic006G156000 Sobic006G156000 Sobic002G128800--Sobic006G156000 Sobic003G219800 Sobic003G219800 Sobic002G128800--Sobic003G219800 Sobic003G443300 Sobic003G443300 Sobic002G128800--Sobic003G443300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.