Gene annotation
Transcriptome id Sobic.003G247800.5,Sobic.003G247800.2,Sobic.003G247800.4,Sobic.003G247800.3
Synonym COR413IM1, COR414-TM1, COR413-TM1
Functional annotation cold acclimation protein WCOR413, putative, expressed
UniProt A0A1W0VYT8
Pfam PF05562
Panther DB PTHR33596 PTHR33596:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G29395 : COLD REGULATED 314 INNER MEMBRANE 1
RAP-DB (Rice) LOC_Os05g49170.1 : cold acclimation protein WCOR413, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G205100 zinc finger/CCCH transcription factor, putative, expressed -
2 Sobic.004G273300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
3 Sobic.009G152600 -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
4 Sobic.007G176600 expressed protein -
5 Sobic.003G067800 universal stress protein domain containing protein, putative, expressed -
6 Sobic.001G425600 "similar to 17.4 kDa class I heat shock protein 3, maped into a unique stay green QTL (QSTG11_1) involved in drought tolerance."(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@similar to 17.4 kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@similar to 17.4kDa class I heat shock protein 3(PubMedID : 24655390)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
7 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
8 Sobic.004G024200 similar to Bax inhibitor 1(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transmembrane BAX inhibitor motif-containing protein, putative, expressed -
9 Sobic.004G109700 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.003G353300 expressed protein -
11 Sobic.009G131400 basic 7S globulin precursor, putative, expressed -
12 Sobic.001G425500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
13 Sobic.007G147600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
14 Sobic.004G086400 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
15 Sobic.006G207000 expressed protein -
16 Sobic.002G208800 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
17 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.003G323201 - -
19 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G201200 - -


Gene co-expression network
sample Sobic003G247800 Sobic003G247800 Sobic009G205100 Sobic009G205100 Sobic003G247800--Sobic009G205100 Sobic004G273300 Sobic004G273300 Sobic003G247800--Sobic004G273300 Sobic009G152600 Sobic009G152600 Sobic003G247800--Sobic009G152600 Sobic007G176600 Sobic007G176600 Sobic003G247800--Sobic007G176600 Sobic003G067800 Sobic003G067800 Sobic003G247800--Sobic003G067800 Sobic001G425600 Sobic001G425600 Sobic003G247800--Sobic001G425600 Sobic008G118700 Sobic008G118700 Sobic003G247800--Sobic008G118700 Sobic004G024200 Sobic004G024200 Sobic003G247800--Sobic004G024200 Sobic004G109700 Sobic004G109700 Sobic003G247800--Sobic004G109700 Sobic009G205100--Sobic003G247800 Sobic001G076100 Sobic001G076100 Sobic009G205100--Sobic001G076100 Sobic001G488000 Sobic001G488000 Sobic009G205100--Sobic001G488000 Sobic003G353300 Sobic003G353300 Sobic009G205100--Sobic003G353300 Sobic003G123600 Sobic003G123600 Sobic009G205100--Sobic003G123600 Sobic009G205100--Sobic008G118700 Sobic003G148600 Sobic003G148600 Sobic009G205100--Sobic003G148600 Sobic001G149800 Sobic001G149800 Sobic009G205100--Sobic001G149800 Sobic001G443800 Sobic001G443800 Sobic009G205100--Sobic001G443800 Sobic004G273300--Sobic001G425600 Sobic001G425500 Sobic001G425500 Sobic004G273300--Sobic001G425500 Sobic004G273300--Sobic004G109700 Sobic001G481300 Sobic001G481300 Sobic004G273300--Sobic001G481300 Sobic004G109600 Sobic004G109600 Sobic004G273300--Sobic004G109600 Sobic001G201200 Sobic001G201200 Sobic004G273300--Sobic001G201200 Sobic002G284000 Sobic002G284000 Sobic004G273300--Sobic002G284000 Sobic001G279350 Sobic001G279350 Sobic004G273300--Sobic001G279350 Sobic009G194400 Sobic009G194400 Sobic004G273300--Sobic009G194400 Sobic009G152600--Sobic003G353300 Sobic009G021600 Sobic009G021600 Sobic009G152600--Sobic009G021600 Sobic008G186100 Sobic008G186100 Sobic009G152600--Sobic008G186100 Sobic003G393900 Sobic003G393900 Sobic009G152600--Sobic003G393900 Sobic003G086600 Sobic003G086600 Sobic009G152600--Sobic003G086600 Sobic009G152600--Sobic008G118700 Sobic001G031700 Sobic001G031700 Sobic009G152600--Sobic001G031700 Sobic003G377100 Sobic003G377100 Sobic009G152600--Sobic003G377100 Sobic001G405500 Sobic001G405500 Sobic009G152600--Sobic001G405500 Sobic001G447100 Sobic001G447100 Sobic007G176600--Sobic001G447100 Sobic003G349700 Sobic003G349700 Sobic007G176600--Sobic003G349700 Sobic006G207000 Sobic006G207000 Sobic007G176600--Sobic006G207000 Sobic006G207100 Sobic006G207100 Sobic007G176600--Sobic006G207100 Sobic007G176600--Sobic004G024200 Sobic010G196600 Sobic010G196600 Sobic007G176600--Sobic010G196600 Sobic004G037000 Sobic004G037000 Sobic007G176600--Sobic004G037000 Sobic004G086400 Sobic004G086400 Sobic007G176600--Sobic004G086400 Sobic007G155200 Sobic007G155200 Sobic007G176600--Sobic007G155200 Sobic001G338600 Sobic001G338600 Sobic003G067800--Sobic001G338600 Sobic003G350700 Sobic003G350700 Sobic003G067800--Sobic003G350700 Sobic006G161400 Sobic006G161400 Sobic003G067800--Sobic006G161400 Sobic004G228900 Sobic004G228900 Sobic003G067800--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic003G067800--Sobic001G426000 Sobic001G052300 Sobic001G052300 Sobic003G067800--Sobic001G052300 Sobic009G255500 Sobic009G255500 Sobic003G067800--Sobic009G255500 Sobic010G104300 Sobic010G104300 Sobic003G067800--Sobic010G104300 Sobic003G067700 Sobic003G067700 Sobic003G067800--Sobic003G067700 Sobic001G425600--Sobic001G425500 Sobic001G425600--Sobic004G109700 Sobic001G425600--Sobic004G273300 Sobic001G425600--Sobic009G194400 Sobic001G425600--Sobic004G109600 Sobic001G425600--Sobic001G481300 Sobic001G425600--Sobic010G196600 Sobic001G425600--Sobic001G279350 Sobic003G323201 Sobic003G323201 Sobic001G425600--Sobic003G323201 Sobic008G118700--Sobic003G377100 Sobic002G068600 Sobic002G068600 Sobic008G118700--Sobic002G068600 Sobic001G107800 Sobic001G107800 Sobic008G118700--Sobic001G107800 Sobic008G118700--Sobic001G201200 Sobic001G254100 Sobic001G254100 Sobic008G118700--Sobic001G254100 Sobic008G118700--Sobic001G149800 Sobic001G371800 Sobic001G371800 Sobic008G118700--Sobic001G371800 Sobic008G118700--Sobic003G148600 Sobic008G118700--Sobic003G353300 Sobic004G024200--Sobic001G447100 Sobic004G024200--Sobic003G349700 Sobic004G024200--Sobic007G176600 Sobic004G024200--Sobic004G086400 Sobic004G024200--Sobic006G207100 Sobic009G131400 Sobic009G131400 Sobic004G024200--Sobic009G131400 Sobic004G146000 Sobic004G146000 Sobic004G024200--Sobic004G146000 Sobic003G041200 Sobic003G041200 Sobic004G024200--Sobic003G041200 Sobic001G108200 Sobic001G108200 Sobic004G024200--Sobic001G108200 Sobic004G109700--Sobic004G109600 Sobic004G109700--Sobic001G425600 Sobic004G109700--Sobic001G425500 Sobic004G109700--Sobic001G481300 Sobic004G109700--Sobic010G196600 Sobic004G109700--Sobic009G194400 Sobic004G109700--Sobic003G323201 Sobic007G214600 Sobic007G214600 Sobic004G109700--Sobic007G214600 Sobic004G109700--Sobic001G279350
Octagon: transcription factors


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