Gene annotation
Transcriptome id Sobic.003G252600.1
Synonym Sb03g030810
Functional annotation PAP/25A associated domain containing protein, putative, expressed
UniProt A0A1W0VYX4
Pfam PF03828 PF01909
Panther DB PTHR23092 PTHR23092:SF15
NCBI CDD KOG1906; DNA polymerase sigma
KEGG Orthology K03514; PAPD5_7, non-canonical poly(A) RNA polymerase PAPD5/7
Gene Ontology GO:0016779; nucleotidyltransferase activity


Orthologs (automatic annotation)
TAIR AT5G53770 : Nucleotidyltransferase family protein
RAP-DB (Rice) LOC_Os01g48210.1 : PAP/25A associated domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a028088
Brachypodium -
Barley HORVU3Hr1G061750.1 , HORVU3Hr1G061750.2 , HORVU3Hr1G061750.4 , HORVU3Hr1G061750.3
Wheat TraesCS3D02G271700 , TraesCS3A02G272100 , TraesCS3B02G305800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
2 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
3 Sobic.010G235200 oral cancer overexpressed protein 1, putative, expressed -
4 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
5 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
6 Sobic.001G477700 WD domain, G-beta repeat domain containing protein, expressed K11807: WDTC1, WD and tetratricopeptide repeats protein 1
7 Sobic.004G068500 CUE domain containing protein, expressed -
8 Sobic.009G131900 - K18177: cytochrome c oxidase assembly factor 4
9 Sobic.001G471000 RNase L inhibitor protein-related, putative, expressed K09140: pre-rRNA-processing protein TSR3
10 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
11 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
12 Sobic.004G307600 ATP-binding domain-containing protein, putative, expressed K14168: CTU1, cytoplasmic tRNA 2-thiolation protein 1
13 Sobic.001G003500 la domain containing protein, putative, expressed K18757: la-related protein 1
14 Sobic.001G118700 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed -
15 Sobic.005G158300 RWD domain containing protein, expressed K10640: RNF25, E3 ubiquitin-protein ligase RNF25
16 Sobic.002G363000 csAtPR5, putative, expressed -
17 Sobic.004G330000 - K14807: DDX51, ATP-dependent RNA helicase DDX51/DBP6
18 Sobic.001G386100 RNA recognition motif containing protein, putative, expressed K13157: U11/U12 small nuclear ribonucleoprotein 65 kDa protein
19 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
20 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase


Gene co-expression network
sample Sobic003G252600 Sobic003G252600 Sobic010G086600 Sobic010G086600 Sobic003G252600--Sobic010G086600 Sobic007G042900 Sobic007G042900 Sobic003G252600--Sobic007G042900 Sobic010G235200 Sobic010G235200 Sobic003G252600--Sobic010G235200 Sobic001G413800 Sobic001G413800 Sobic003G252600--Sobic001G413800 Sobic007G180600 Sobic007G180600 Sobic003G252600--Sobic007G180600 Sobic001G477700 Sobic001G477700 Sobic003G252600--Sobic001G477700 Sobic004G068500 Sobic004G068500 Sobic003G252600--Sobic004G068500 Sobic009G131900 Sobic009G131900 Sobic003G252600--Sobic009G131900 Sobic001G471000 Sobic001G471000 Sobic003G252600--Sobic001G471000 Sobic010G086600--Sobic007G042900 Sobic002G193300 Sobic002G193300 Sobic010G086600--Sobic002G193300 Sobic001G542450 Sobic001G542450 Sobic010G086600--Sobic001G542450 Sobic008G002300 Sobic008G002300 Sobic010G086600--Sobic008G002300 Sobic002G292900 Sobic002G292900 Sobic010G086600--Sobic002G292900 Sobic010G089400 Sobic010G089400 Sobic010G086600--Sobic010G089400 Sobic002G371300 Sobic002G371300 Sobic010G086600--Sobic002G371300 Sobic006G088200 Sobic006G088200 Sobic010G086600--Sobic006G088200 Sobic010G086600--Sobic007G180600 Sobic004G345400 Sobic004G345400 Sobic007G042900--Sobic004G345400 Sobic009G249700 Sobic009G249700 Sobic007G042900--Sobic009G249700 Sobic001G042200 Sobic001G042200 Sobic007G042900--Sobic001G042200 Sobic005G110499 Sobic005G110499 Sobic007G042900--Sobic005G110499 Sobic010G169900 Sobic010G169900 Sobic007G042900--Sobic010G169900 Sobic003G182300 Sobic003G182300 Sobic007G042900--Sobic003G182300 Sobic003G394200 Sobic003G394200 Sobic007G042900--Sobic003G394200 Sobic006G139100 Sobic006G139100 Sobic007G042900--Sobic006G139100 Sobic001G005600 Sobic001G005600 Sobic007G042900--Sobic001G005600 Sobic004G307600 Sobic004G307600 Sobic010G235200--Sobic004G307600 Sobic004G228800 Sobic004G228800 Sobic010G235200--Sobic004G228800 Sobic007G093800 Sobic007G093800 Sobic010G235200--Sobic007G093800 Sobic010G264000 Sobic010G264000 Sobic010G235200--Sobic010G264000 Sobic008G124900 Sobic008G124900 Sobic010G235200--Sobic008G124900 Sobic004G323700 Sobic004G323700 Sobic010G235200--Sobic004G323700 Sobic010G235200--Sobic009G131900 Sobic002G303600 Sobic002G303600 Sobic010G235200--Sobic002G303600 Sobic003G312200 Sobic003G312200 Sobic010G235200--Sobic003G312200 Sobic001G413800--Sobic001G477700 Sobic006G180700 Sobic006G180700 Sobic001G413800--Sobic006G180700 Sobic001G034500 Sobic001G034500 Sobic001G413800--Sobic001G034500 Sobic006G154100 Sobic006G154100 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic001G413800--Sobic007G042900 Sobic010G204400 Sobic010G204400 Sobic001G413800--Sobic010G204400 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000 Sobic001G251200 Sobic001G251200 Sobic007G180600--Sobic001G251200 Sobic007G180600--Sobic004G228800 Sobic006G131000 Sobic006G131000 Sobic007G180600--Sobic006G131000 Sobic008G185500 Sobic008G185500 Sobic007G180600--Sobic008G185500 Sobic007G180600--Sobic001G477700 Sobic001G522100 Sobic001G522100 Sobic007G180600--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic007G180600--Sobic004G261600 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200 Sobic001G477700--Sobic006G131000 Sobic001G096000 Sobic001G096000 Sobic001G477700--Sobic001G096000 Sobic001G477700--Sobic007G042900 Sobic001G477700--Sobic001G034500 Sobic007G196900 Sobic007G196900 Sobic001G477700--Sobic007G196900 Sobic001G477700--Sobic007G180600 Sobic001G477700--Sobic001G413800 Sobic003G284000 Sobic003G284000 Sobic001G477700--Sobic003G284000 Sobic001G477700--Sobic010G204400 Sobic007G111100 Sobic007G111100 Sobic004G068500--Sobic007G111100 Sobic002G262700 Sobic002G262700 Sobic004G068500--Sobic002G262700 Sobic004G068500--Sobic001G005600 Sobic002G177000 Sobic002G177000 Sobic004G068500--Sobic002G177000 Sobic007G046200 Sobic007G046200 Sobic004G068500--Sobic007G046200 Sobic004G068500--Sobic001G042200 Sobic004G068500--Sobic007G042900 Sobic003G051200 Sobic003G051200 Sobic004G068500--Sobic003G051200 Sobic001G517500 Sobic001G517500 Sobic004G068500--Sobic001G517500 Sobic003G104000 Sobic003G104000 Sobic009G131900--Sobic003G104000 Sobic006G270600 Sobic006G270600 Sobic009G131900--Sobic006G270600 Sobic004G316700 Sobic004G316700 Sobic009G131900--Sobic004G316700 Sobic009G131900--Sobic007G042900 Sobic009G131900--Sobic003G182300 Sobic009G131900--Sobic010G235200 Sobic009G131900--Sobic006G131000 Sobic008G129600 Sobic008G129600 Sobic009G131900--Sobic008G129600 Sobic009G131900--Sobic010G264000 Sobic007G112600 Sobic007G112600 Sobic001G471000--Sobic007G112600 Sobic001G471000--Sobic010G235200 Sobic006G142400 Sobic006G142400 Sobic001G471000--Sobic006G142400 Sobic001G471000--Sobic007G042900 Sobic001G471000--Sobic004G068500 Sobic005G155100 Sobic005G155100 Sobic001G471000--Sobic005G155100 Sobic007G077400 Sobic007G077400 Sobic001G471000--Sobic007G077400 Sobic001G471000--Sobic001G477700 Sobic007G162800 Sobic007G162800 Sobic001G471000--Sobic007G162800
Octagon: transcription factors


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