Gene annotation
Transcriptome id Sobic.003G280500.1
Synonym Sb03g033210, LOS1
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
elongation factor, putative, expressed
UniProt C5XIE3
Pfam PF14492 PF03144 PF00679 PF03764 PF00009
Panther DB PTHR23115 PTHR23115:SF139
NCBI CDD -
KEGG Orthology K03234; elongation factor 2
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G56070 : Ribosomal protein S5/Elongation factor G/III/V family protein
RAP-DB (Rice) LOC_Os02g32030.1 : elongation factor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G259401 - K06130: lysophospholipase II
2 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
3 Sobic.001G282700 early-responsive to dehydration protein-related, putative, expressed -
4 Sobic.001G000400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -
5 Sobic.006G244400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nuclease PA3, putative, expressed -
6 Sobic.008G113600 glutathione synthetase, chloroplast precursor, putative, expressed K01920: glutathione synthase
7 Sobic.005G139400 SNARE associated Golgi protein, putative, expressed -
8 Sobic.005G152200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K00815: tyrosine aminotransferase
9 Sobic.002G306700 expressed protein -
10 Sobic.003G432100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
11 Sobic.009G139800 rab GDP dissociation inhibitor alpha, putative, expressed K17255: Rab GDP dissociation inhibitor
12 Sobic.007G065500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
13 Sobic.006G220500 -(PubMedID : 26976818)@hydroxyacid oxidase 1, putative, expressed K11517: (S)-2-hydroxy-acid oxidase
14 Sobic.008G151500 EXS family protein, putative, expressed -
15 Sobic.004G226500 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
16 Sobic.003G134800 coatomer subunit beta-1, putative, expressed K17301: COPB1, coatomer subunit beta
17 Sobic.007G120800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
18 Sobic.009G172500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
19 Sobic.003G348800 NAD dependent epimerase/dehydratase family domain containing protein, expressed K08678: UXS1, UDP-glucuronate decarboxylase
20 Sobic.002G141700 unc-50, putative, expressed -


Gene co-expression network
sample Sobic003G280500 Sobic003G280500 Sobic006G259401 Sobic006G259401 Sobic003G280500--Sobic006G259401 Sobic001G220900 Sobic001G220900 Sobic003G280500--Sobic001G220900 Sobic001G282700 Sobic001G282700 Sobic003G280500--Sobic001G282700 Sobic001G000400 Sobic001G000400 Sobic003G280500--Sobic001G000400 Sobic006G244400 Sobic006G244400 Sobic003G280500--Sobic006G244400 Sobic008G113600 Sobic008G113600 Sobic003G280500--Sobic008G113600 Sobic005G139400 Sobic005G139400 Sobic003G280500--Sobic005G139400 Sobic005G152200 Sobic005G152200 Sobic003G280500--Sobic005G152200 Sobic002G306700 Sobic002G306700 Sobic003G280500--Sobic002G306700 Sobic003G045600 Sobic003G045600 Sobic006G259401--Sobic003G045600 Sobic008G151500 Sobic008G151500 Sobic006G259401--Sobic008G151500 Sobic003G236800 Sobic003G236800 Sobic006G259401--Sobic003G236800 Sobic002G101300 Sobic002G101300 Sobic006G259401--Sobic002G101300 Sobic007G120800 Sobic007G120800 Sobic006G259401--Sobic007G120800 Sobic001G140000 Sobic001G140000 Sobic006G259401--Sobic001G140000 Sobic002G283100 Sobic002G283100 Sobic006G259401--Sobic002G283100 Sobic001G392200 Sobic001G392200 Sobic006G259401--Sobic001G392200 Sobic007G179900 Sobic007G179900 Sobic006G259401--Sobic007G179900 Sobic001G490500 Sobic001G490500 Sobic001G220900--Sobic001G490500 Sobic002G141700 Sobic002G141700 Sobic001G220900--Sobic002G141700 Sobic001G281900 Sobic001G281900 Sobic001G220900--Sobic001G281900 Sobic001G220900--Sobic008G151500 Sobic001G145500 Sobic001G145500 Sobic001G220900--Sobic001G145500 Sobic001G443200 Sobic001G443200 Sobic001G220900--Sobic001G443200 Sobic003G134800 Sobic003G134800 Sobic001G220900--Sobic003G134800 Sobic003G009300 Sobic003G009300 Sobic001G220900--Sobic003G009300 Sobic001G077900 Sobic001G077900 Sobic001G220900--Sobic001G077900 Sobic009G139800 Sobic009G139800 Sobic001G282700--Sobic009G139800 Sobic009G030400 Sobic009G030400 Sobic001G282700--Sobic009G030400 Sobic003G428200 Sobic003G428200 Sobic001G282700--Sobic003G428200 Sobic007G065500 Sobic007G065500 Sobic001G282700--Sobic007G065500 Sobic001G282700--Sobic006G259401 Sobic009G234800 Sobic009G234800 Sobic001G282700--Sobic009G234800 Sobic005G197100 Sobic005G197100 Sobic001G282700--Sobic005G197100 Sobic004G282100 Sobic004G282100 Sobic001G282700--Sobic004G282100 Sobic001G456800 Sobic001G456800 Sobic001G282700--Sobic001G456800 Sobic001G000400--Sobic006G259401 Sobic001G000400--Sobic003G045600 Sobic009G083800 Sobic009G083800 Sobic001G000400--Sobic009G083800 Sobic007G119800 Sobic007G119800 Sobic001G000400--Sobic007G119800 Sobic006G220500 Sobic006G220500 Sobic001G000400--Sobic006G220500 Sobic001G000400--Sobic007G065500 Sobic001G000400--Sobic002G283100 Sobic003G169900 Sobic003G169900 Sobic001G000400--Sobic003G169900 Sobic001G458800 Sobic001G458800 Sobic001G000400--Sobic001G458800 Sobic001G512800 Sobic001G512800 Sobic006G244400--Sobic001G512800 Sobic010G206000 Sobic010G206000 Sobic006G244400--Sobic010G206000 Sobic005G024900 Sobic005G024900 Sobic006G244400--Sobic005G024900 Sobic010G248900 Sobic010G248900 Sobic006G244400--Sobic010G248900 Sobic002G155400 Sobic002G155400 Sobic006G244400--Sobic002G155400 Sobic006G100332 Sobic006G100332 Sobic006G244400--Sobic006G100332 Sobic002G409500 Sobic002G409500 Sobic006G244400--Sobic002G409500 Sobic007G068100 Sobic007G068100 Sobic006G244400--Sobic007G068100 Sobic005G079900 Sobic005G079900 Sobic006G244400--Sobic005G079900 Sobic008G113600--Sobic009G139800 Sobic008G113600--Sobic003G169900 Sobic002G375800 Sobic002G375800 Sobic008G113600--Sobic002G375800 Sobic008G113600--Sobic001G220900 Sobic001G338400 Sobic001G338400 Sobic008G113600--Sobic001G338400 Sobic007G075500 Sobic007G075500 Sobic008G113600--Sobic007G075500 Sobic003G348800 Sobic003G348800 Sobic008G113600--Sobic003G348800 Sobic008G113600--Sobic001G077900 Sobic001G109300 Sobic001G109300 Sobic008G113600--Sobic001G109300 Sobic010G016400 Sobic010G016400 Sobic005G139400--Sobic010G016400 Sobic004G347300 Sobic004G347300 Sobic005G139400--Sobic004G347300 Sobic006G232000 Sobic006G232000 Sobic005G139400--Sobic006G232000 Sobic001G010400 Sobic001G010400 Sobic005G139400--Sobic001G010400 Sobic006G192700 Sobic006G192700 Sobic005G139400--Sobic006G192700 Sobic002G113800 Sobic002G113800 Sobic005G139400--Sobic002G113800 Sobic001G132000 Sobic001G132000 Sobic005G139400--Sobic001G132000 Sobic007G148800 Sobic007G148800 Sobic005G139400--Sobic007G148800 Sobic004G185900 Sobic004G185900 Sobic005G139400--Sobic004G185900 Sobic002G024100 Sobic002G024100 Sobic005G152200--Sobic002G024100 Sobic005G152200--Sobic005G024900 Sobic009G172500 Sobic009G172500 Sobic005G152200--Sobic009G172500 Sobic006G096400 Sobic006G096400 Sobic005G152200--Sobic006G096400 Sobic003G229200 Sobic003G229200 Sobic005G152200--Sobic003G229200 Sobic009G161401 Sobic009G161401 Sobic005G152200--Sobic009G161401 Sobic009G210300 Sobic009G210300 Sobic005G152200--Sobic009G210300 Sobic007G078100 Sobic007G078100 Sobic005G152200--Sobic007G078100 Sobic005G152200--Sobic001G010400 Sobic004G079700 Sobic004G079700 Sobic002G306700--Sobic004G079700 Sobic002G114800 Sobic002G114800 Sobic002G306700--Sobic002G114800 Sobic003G432100 Sobic003G432100 Sobic002G306700--Sobic003G432100 Sobic002G408800 Sobic002G408800 Sobic002G306700--Sobic002G408800 Sobic008G156300 Sobic008G156300 Sobic002G306700--Sobic008G156300 Sobic002G306700--Sobic007G120800 Sobic006G243500 Sobic006G243500 Sobic002G306700--Sobic006G243500 Sobic004G163300 Sobic004G163300 Sobic002G306700--Sobic004G163300 Sobic005G075600 Sobic005G075600 Sobic002G306700--Sobic005G075600
Octagon: transcription factors


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