Gene annotation
Transcriptome id Sobic.002G306700.2,Sobic.002G306700.3,Sobic.002G306700.1
Synonym Sb02g033690, VAD1
Functional annotation expressed protein
UniProt A0A1W0W6D4 , A0A1B6QEA7
Pfam PF02893 PF16016
Panther DB PTHR23319 PTHR23319:SF4 PTHR23319
NCBI CDD KOG1032; Uncharacterized conserved protein, contains GRAM domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02120 : GRAM domain family protein
RAP-DB (Rice) LOC_Os07g30940.1 : expressed protein
MaizeGDB (Corn) Zm00025a048092 , Zm00025a014697
Brachypodium KQK16178
Barley HORVU2Hr1G050790.9 , HORVU2Hr1G050790.8 , HORVU2Hr1G050790.1 , HORVU2Hr1G050790.3 , HORVU2Hr1G050790.2 , HORVU2Hr1G050790.5 , HORVU2Hr1G050790.4 , HORVU2Hr1G050790.7 , HORVU2Hr1G050790.6 , HORVU2Hr1G050790.14 , HORVU2Hr1G050790.11 , HORVU2Hr1G050790.10 , HORVU2Hr1G050790.13 , HORVU2Hr1G050790.12
Wheat TraesCS2D02G236800 , TraesCS2B02G253500 , TraesCS2B02G253500 , TraesCS2B02G253500 , TraesCS2A02G231900 , TraesCS2A02G231900 , TraesCS2A02G231900 , TraesCS2A02G231900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G079700 metal cation transporter, putative, expressed K07238: TC.ZIP, zupT, ZRT3, zinc transporter, ZIP family
2 Sobic.002G114800 CDPK - calcium-dependent protein kinase 18(PubMedID : 31721651)@CAMK_CAMK_like.32 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
3 Sobic.003G432100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD kinase, putative, expressed K00858: ppnK, NAD+ kinase
4 Sobic.002G408800 protein kinase family protein, putative, expressed K08819: cyclin-dependent kinase 12/13
5 Sobic.008G156300 kinase, pfkB family, putative, expressed K00868: pdxK, pyridoxine kinase
6 Sobic.007G120800 puromycin-sensitive aminopeptidase, putative, expressed K08776: puromycin-sensitive aminopeptidase
7 Sobic.006G243500 alpha-N-acetylglucosaminidase, putative, expressed K01205: alpha-N-acetylglucosaminidase
8 Sobic.004G163300 protein kinase domain containing protein, expressed K14510: serine/threonine-protein kinase CTR1
9 Sobic.005G075600 rp3 protein, putative, expressed -
10 Sobic.007G120000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.004G173600 OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed K09580: PDIA1, protein disulfide-isomerase A1
12 Sobic.004G161900 AMP-binding enzyme, putative, expressed K01895: ACSS1_2, acetyl-CoA synthetase
13 Sobic.001G540100 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
14 Sobic.003G280300 STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
15 Sobic.007G119800 ABC transporter, ATP-binding protein, putative, expressed -
16 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
17 Sobic.003G440900 Invertase genes(PubMedID : 24456189)@"Beta-fructofuranosidase, cell wall Invertase 4 (Os)"(PubMedID : 27208977)@Sugar degradation(PubMedID : 27330561)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
18 Sobic.005G134600 natural resistance-associated macrophage protein, putative, expressed K12347: SLC11A1, natural resistance-associated macrophage protein 1
19 Sobic.005G229166 - -
20 Sobic.001G460400 expressed protein -


Gene co-expression network
sample Sobic002G306700 Sobic002G306700 Sobic004G079700 Sobic004G079700 Sobic002G306700--Sobic004G079700 Sobic002G114800 Sobic002G114800 Sobic002G306700--Sobic002G114800 Sobic003G432100 Sobic003G432100 Sobic002G306700--Sobic003G432100 Sobic002G408800 Sobic002G408800 Sobic002G306700--Sobic002G408800 Sobic008G156300 Sobic008G156300 Sobic002G306700--Sobic008G156300 Sobic007G120800 Sobic007G120800 Sobic002G306700--Sobic007G120800 Sobic006G243500 Sobic006G243500 Sobic002G306700--Sobic006G243500 Sobic004G163300 Sobic004G163300 Sobic002G306700--Sobic004G163300 Sobic005G075600 Sobic005G075600 Sobic002G306700--Sobic005G075600 Sobic004G079700--Sobic006G243500 Sobic004G079700--Sobic002G306700 Sobic004G161900 Sobic004G161900 Sobic004G079700--Sobic004G161900 Sobic003G368000 Sobic003G368000 Sobic004G079700--Sobic003G368000 Sobic004G261500 Sobic004G261500 Sobic004G079700--Sobic004G261500 Sobic001G443100 Sobic001G443100 Sobic004G079700--Sobic001G443100 Sobic007G193200 Sobic007G193200 Sobic004G079700--Sobic007G193200 Sobic005G100800 Sobic005G100800 Sobic004G079700--Sobic005G100800 Sobic005G033000 Sobic005G033000 Sobic004G079700--Sobic005G033000 Sobic001G049200 Sobic001G049200 Sobic002G114800--Sobic001G049200 Sobic009G177400 Sobic009G177400 Sobic002G114800--Sobic009G177400 Sobic001G328000 Sobic001G328000 Sobic002G114800--Sobic001G328000 Sobic002G114800--Sobic004G163300 Sobic004G173600 Sobic004G173600 Sobic002G114800--Sobic004G173600 Sobic009G102300 Sobic009G102300 Sobic002G114800--Sobic009G102300 Sobic002G114800--Sobic002G306700 Sobic005G134600 Sobic005G134600 Sobic002G114800--Sobic005G134600 Sobic001G540100 Sobic001G540100 Sobic002G114800--Sobic001G540100 Sobic010G220600 Sobic010G220600 Sobic003G432100--Sobic010G220600 Sobic003G432100--Sobic002G306700 Sobic009G139800 Sobic009G139800 Sobic003G432100--Sobic009G139800 Sobic003G348800 Sobic003G348800 Sobic003G432100--Sobic003G348800 Sobic010G161450 Sobic010G161450 Sobic003G432100--Sobic010G161450 Sobic002G194800 Sobic002G194800 Sobic003G432100--Sobic002G194800 Sobic007G065500 Sobic007G065500 Sobic003G432100--Sobic007G065500 Sobic003G092700 Sobic003G092700 Sobic003G432100--Sobic003G092700 Sobic001G109300 Sobic001G109300 Sobic003G432100--Sobic001G109300 Sobic002G408800--Sobic007G120800 Sobic003G029600 Sobic003G029600 Sobic002G408800--Sobic003G029600 Sobic002G029300 Sobic002G029300 Sobic002G408800--Sobic002G029300 Sobic009G049400 Sobic009G049400 Sobic002G408800--Sobic009G049400 Sobic005G074100 Sobic005G074100 Sobic002G408800--Sobic005G074100 Sobic001G322000 Sobic001G322000 Sobic002G408800--Sobic001G322000 Sobic006G056200 Sobic006G056200 Sobic002G408800--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic002G408800--Sobic009G231700 Sobic010G216000 Sobic010G216000 Sobic002G408800--Sobic010G216000 Sobic008G156300--Sobic007G120800 Sobic006G203100 Sobic006G203100 Sobic008G156300--Sobic006G203100 Sobic001G432300 Sobic001G432300 Sobic008G156300--Sobic001G432300 Sobic010G274500 Sobic010G274500 Sobic008G156300--Sobic010G274500 Sobic005G229166 Sobic005G229166 Sobic008G156300--Sobic005G229166 Sobic010G050200 Sobic010G050200 Sobic008G156300--Sobic010G050200 Sobic008G156300--Sobic002G114800 Sobic008G156300--Sobic002G306700 Sobic008G156300--Sobic001G540100 Sobic007G120800--Sobic002G408800 Sobic007G120800--Sobic002G029300 Sobic007G120800--Sobic002G194800 Sobic007G120800--Sobic006G056200 Sobic007G120800--Sobic008G156300 Sobic007G173700 Sobic007G173700 Sobic007G120800--Sobic007G173700 Sobic001G161700 Sobic001G161700 Sobic007G120800--Sobic001G161700 Sobic006G259401 Sobic006G259401 Sobic007G120800--Sobic006G259401 Sobic007G120800--Sobic007G065500 Sobic006G243500--Sobic004G079700 Sobic009G246700 Sobic009G246700 Sobic006G243500--Sobic009G246700 Sobic006G243500--Sobic004G161900 Sobic003G045600 Sobic003G045600 Sobic006G243500--Sobic003G045600 Sobic006G243500--Sobic005G100800 Sobic001G460400 Sobic001G460400 Sobic006G243500--Sobic001G460400 Sobic006G000600 Sobic006G000600 Sobic006G243500--Sobic006G000600 Sobic006G243500--Sobic007G193200 Sobic006G243500--Sobic002G408800 Sobic004G163300--Sobic002G114800 Sobic004G163300--Sobic009G177400 Sobic004G354400 Sobic004G354400 Sobic004G163300--Sobic004G354400 Sobic001G201500 Sobic001G201500 Sobic004G163300--Sobic001G201500 Sobic010G242900 Sobic010G242900 Sobic004G163300--Sobic010G242900 Sobic003G313400 Sobic003G313400 Sobic004G163300--Sobic003G313400 Sobic009G229300 Sobic009G229300 Sobic004G163300--Sobic009G229300 Sobic004G163300--Sobic002G306700 Sobic004G163300--Sobic001G049200 Sobic007G120000 Sobic007G120000 Sobic005G075600--Sobic007G120000 Sobic010G126900 Sobic010G126900 Sobic005G075600--Sobic010G126900 Sobic007G119800 Sobic007G119800 Sobic005G075600--Sobic007G119800 Sobic004G103400 Sobic004G103400 Sobic005G075600--Sobic004G103400 Sobic004G153100 Sobic004G153100 Sobic005G075600--Sobic004G153100 Sobic001G218500 Sobic001G218500 Sobic005G075600--Sobic001G218500 Sobic003G020500 Sobic003G020500 Sobic005G075600--Sobic003G020500 Sobic003G106300 Sobic003G106300 Sobic005G075600--Sobic003G106300 Sobic005G075600--Sobic005G134600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.