Gene annotation
| Transcriptome id | Sobic.003G304100.1 |
|---|---|
| Synonym | Sb03g035270 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) peptide transporter PTR2, putative, expressed |
| UniProt | C5XKU3 |
| Pfam | PF00854 |
| Panther DB | PTHR11654 PTHR11654:SF58 |
| NCBI CDD | KOG1237; H+/oligopeptide symporter |
| KEGG Orthology | - |
| Gene Ontology | GO:0016020; membrane GO:0006810transport GO:0005215transporter activity |
Orthologs (automatic annotation)
| TAIR | AT1G52190 : Major facilitator superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g55610.1 : peptide transporter PTR2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027462 |
| Brachypodium | KQK09862 |
| Barley | HORVU3Hr1G073580.1 |
| Wheat | TraesCS3D02G297600 , TraesCS3B02G332100 , TraesCS3A02G304400 |
| Populus | - |
JBrowse
| Sobic.003G304100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G223800 | ZOS8-01 - C2H2 zinc finger protein, expressed | - |
| 2 | Sobic.001G510400 | cytochrome P450 86A1, putative, expressed | - |
| 3 | Sobic.005G208900 | expressed protein | K11968: ariadne-1 |
| 4 | Sobic.007G196400 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed | K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22 |
| 5 | Sobic.007G139900 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 6 | Sobic.001G030600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed | - |
| 7 | Sobic.001G502700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed | - |
| 8 | Sobic.007G224300 | RING finger protein, putative, expressed | - |
| 9 | Sobic.005G110421 | - | - |
| 10 | Sobic.001G112000 | 3,4-dihydroxy-2-butanone kinase, putative, expressed | K00863: DAK, triose/dihydroxyacetone kinase / FAD-AMP lyase (cyclizing) |
| 11 | Sobic.008G010900 | DNA repair protein Rad51, putative, expressed | K10872: meiotic recombination protein DMC1 |
| 12 | Sobic.004G155200 | expressed protein | - |
| 13 | Sobic.002G185300 | transporter, putative, expressed | - |
| 14 | Sobic.003G197300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AR791, putative, expressed | - |
| 15 | Sobic.002G014200 | OsFBX209 - F-box domain containing protein, expressed | - |
| 16 | Sobic.001G044800 | uncharacterized glycosyltransferase, putative, expressed | K06617: raffinose synthase |
| 17 | Sobic.008G109700 | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed | K18054: 2'-deoxymugineic-acid 2'-dioxygenase / mugineic-acid 3-dioxygenase |
| 18 | Sobic.010G093400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Starch synthesis(PubMedID : 31624872)@Starch Synthase IIa(PubMedID : 21853065)@soluble starch synthase 2-3, chloroplast precursor, putative, expressed | K00703: starch synthase |
| 19 | Sobic.001G095750 | - | - |
| 20 | Sobic.009G156600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
Gene co-expression network
Octagon: transcription factors
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