Gene annotation
Transcriptome id Sobic.003G363000.2,Sobic.003G363000.3,Sobic.003G363000.1,Sobic.003G363000.4
Synonym Sb03g040470
Functional annotation expressed protein
UniProt C5XQH9 , A0A1W0W0I2 , A0A1W0W0J2
Pfam -
Panther DB PTHR37211 PTHR37211:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27590 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os01g63950.1 : expressed protein
MaizeGDB (Corn) Zm00025a026774
Brachypodium KQK10680 , KQK10679 , KQK10678
Barley HORVU3Hr1G084420.3 , HORVU3Hr1G084420.6 , HORVU3Hr1G084420.9 , HORVU3Hr1G084420.8 , HORVU3Hr1G084420.2 , HORVU3Hr1G084420.1 , HORVU3Hr1G084420.7 , HORVU3Hr1G084420.5 , HORVU3Hr1G084420.4 , HORVU3Hr1G084420.10 , HORVU3Hr1G084420.11
Wheat TraesCS3D02G364500 , TraesCS3A02G371400 , TraesCS3B02G403600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
2 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
3 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
4 Sobic.010G175000 expressed protein -
5 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
6 Sobic.002G003300 - K10884: XRCC6, KU70, ATP-dependent DNA helicase 2 subunit 1
7 Sobic.005G079201 - -
8 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
9 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
10 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
11 Sobic.003G104100 expressed protein -
12 Sobic.005G163400 dnaJ domain containing protein, expressed -
13 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
14 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
15 Sobic.010G024500 expressed protein -
16 Sobic.003G311600 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
17 Sobic.005G088900 AGAP007117-PA, putative, expressed -
18 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
19 Sobic.003G196000 expressed protein -
20 Sobic.009G045300 OsFBL21 - F-box domain and LRR containing protein, expressed K14485: transport inhibitor response 1


Gene co-expression network
sample Sobic003G363000 Sobic003G363000 Sobic009G191500 Sobic009G191500 Sobic003G363000--Sobic009G191500 Sobic003G336500 Sobic003G336500 Sobic003G363000--Sobic003G336500 Sobic008G123200 Sobic008G123200 Sobic003G363000--Sobic008G123200 Sobic010G175000 Sobic010G175000 Sobic003G363000--Sobic010G175000 Sobic008G068100 Sobic008G068100 Sobic003G363000--Sobic008G068100 Sobic002G003300 Sobic002G003300 Sobic003G363000--Sobic002G003300 Sobic005G079201 Sobic005G079201 Sobic003G363000--Sobic005G079201 Sobic007G060600 Sobic007G060600 Sobic003G363000--Sobic007G060600 Sobic009G148200 Sobic009G148200 Sobic003G363000--Sobic009G148200 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic005G138000 Sobic005G138000 Sobic008G123200--Sobic005G138000 Sobic009G224300 Sobic009G224300 Sobic008G123200--Sobic009G224300 Sobic008G123200--Sobic003G336500 Sobic001G448000 Sobic001G448000 Sobic008G123200--Sobic001G448000 Sobic008G123200--Sobic010G175000 Sobic007G038700 Sobic007G038700 Sobic008G123200--Sobic007G038700 Sobic004G123200 Sobic004G123200 Sobic008G123200--Sobic004G123200 Sobic009G105400 Sobic009G105400 Sobic008G123200--Sobic009G105400 Sobic008G165266 Sobic008G165266 Sobic008G123200--Sobic008G165266 Sobic004G192500 Sobic004G192500 Sobic010G175000--Sobic004G192500 Sobic010G257000 Sobic010G257000 Sobic010G175000--Sobic010G257000 Sobic006G226000 Sobic006G226000 Sobic010G175000--Sobic006G226000 Sobic009G188900 Sobic009G188900 Sobic010G175000--Sobic009G188900 Sobic006G281900 Sobic006G281900 Sobic010G175000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic010G175000--Sobic006G275500 Sobic006G016700 Sobic006G016700 Sobic010G175000--Sobic006G016700 Sobic002G168000 Sobic002G168000 Sobic010G175000--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic010G175000--Sobic002G055800 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic002G003300--Sobic004G215900 Sobic002G003300--Sobic009G191500 Sobic002G003300--Sobic008G068100 Sobic008G111600 Sobic008G111600 Sobic002G003300--Sobic008G111600 Sobic002G003300--Sobic005G088900 Sobic002G003300--Sobic006G236000 Sobic002G043000 Sobic002G043000 Sobic002G003300--Sobic002G043000 Sobic002G003300--Sobic001G024000 Sobic006G181800 Sobic006G181800 Sobic002G003300--Sobic006G181800 Sobic005G079201--Sobic008G068100 Sobic005G079201--Sobic009G191500 Sobic005G079201--Sobic004G215900 Sobic005G079201--Sobic006G236000 Sobic005G079201--Sobic005G088900 Sobic008G090000 Sobic008G090000 Sobic005G079201--Sobic008G090000 Sobic005G079201--Sobic002G043000 Sobic005G079201--Sobic002G003300 Sobic001G408300 Sobic001G408300 Sobic005G079201--Sobic001G408300 Sobic001G049800 Sobic001G049800 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300
Octagon: transcription factors


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