Gene annotation
Transcriptome id Sobic.003G366200.1
Synonym Sb03g040790
Functional annotation harpin-induced protein 1 domain containing protein, expressed
UniProt A0A1W0W0K7
Pfam PF03168
Panther DB PTHR31415:SF4 PTHR31415
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35460 : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
RAP-DB (Rice) LOC_Os01g64450.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026733
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G296300 WRKY13, expressed -
2 Sobic.004G101000 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
4 Sobic.009G192100 DUF567 domain containing protein, putative, expressed -
5 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
6 Sobic.001G345400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ring-H2 zinc finger protein, putative, expressed -
7 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -
8 Sobic.001G319100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.010G157500 zinc finger protein, putative, expressed -
10 Sobic.009G216050 - -
11 Sobic.006G246100 one cut domain family member 3, putative, expressed -
12 Sobic.008G188000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
13 Sobic.009G173800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RING-H2 finger protein, putative, expressed -
14 Sobic.001G530350 - -
15 Sobic.001G357500 amino acid permease family protein, putative, expressed -
16 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.001G093900 stem-specific protein TSJT1, putative, expressed -
18 Sobic.010G275001 - -
19 Sobic.009G232266 - -
20 Sobic.006G167800 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic003G366200 Sobic003G366200 Sobic003G296300 Sobic003G296300 Sobic003G366200--Sobic003G296300 Sobic004G101000 Sobic004G101000 Sobic003G366200--Sobic004G101000 Sobic004G195000 Sobic004G195000 Sobic003G366200--Sobic004G195000 Sobic009G192100 Sobic009G192100 Sobic003G366200--Sobic009G192100 Sobic009G121600 Sobic009G121600 Sobic003G366200--Sobic009G121600 Sobic001G345400 Sobic001G345400 Sobic003G366200--Sobic001G345400 Sobic002G377100 Sobic002G377100 Sobic003G366200--Sobic002G377100 Sobic001G319100 Sobic001G319100 Sobic003G366200--Sobic001G319100 Sobic010G157500 Sobic010G157500 Sobic003G366200--Sobic010G157500 Sobic003G296300--Sobic001G345400 Sobic006G246100 Sobic006G246100 Sobic003G296300--Sobic006G246100 Sobic003G296300--Sobic004G101000 Sobic006G167800 Sobic006G167800 Sobic003G296300--Sobic006G167800 Sobic001G093900 Sobic001G093900 Sobic003G296300--Sobic001G093900 Sobic003G296300--Sobic010G157500 Sobic009G038000 Sobic009G038000 Sobic003G296300--Sobic009G038000 Sobic001G526000 Sobic001G526000 Sobic003G296300--Sobic001G526000 Sobic001G195100 Sobic001G195100 Sobic003G296300--Sobic001G195100 Sobic004G101000--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G101000--Sobic009G216050 Sobic004G101000--Sobic003G296300 Sobic004G101000--Sobic009G038000 Sobic002G407200 Sobic002G407200 Sobic004G101000--Sobic002G407200 Sobic010G214200 Sobic010G214200 Sobic004G101000--Sobic010G214200 Sobic001G314800 Sobic001G314800 Sobic004G101000--Sobic001G314800 Sobic004G101000--Sobic001G195100 Sobic003G310500 Sobic003G310500 Sobic004G101000--Sobic003G310500 Sobic001G319200 Sobic001G319200 Sobic004G195000--Sobic001G319200 Sobic004G195000--Sobic006G246100 Sobic003G277500 Sobic003G277500 Sobic004G195000--Sobic003G277500 Sobic005G080200 Sobic005G080200 Sobic004G195000--Sobic005G080200 Sobic004G195000--Sobic003G296300 Sobic002G407700 Sobic002G407700 Sobic004G195000--Sobic002G407700 Sobic001G403300 Sobic001G403300 Sobic004G195000--Sobic001G403300 Sobic004G195000--Sobic002G377100 Sobic005G155600 Sobic005G155600 Sobic004G195000--Sobic005G155600 Sobic008G181300 Sobic008G181300 Sobic009G192100--Sobic008G181300 Sobic009G192100--Sobic002G407200 Sobic001G518800 Sobic001G518800 Sobic009G192100--Sobic001G518800 Sobic008G018600 Sobic008G018600 Sobic009G192100--Sobic008G018600 Sobic001G182600 Sobic001G182600 Sobic009G192100--Sobic001G182600 Sobic008G038100 Sobic008G038100 Sobic009G192100--Sobic008G038100 Sobic009G192100--Sobic001G345400 Sobic001G056500 Sobic001G056500 Sobic009G192100--Sobic001G056500 Sobic002G403300 Sobic002G403300 Sobic009G192100--Sobic002G403300 Sobic005G226100 Sobic005G226100 Sobic009G121600--Sobic005G226100 Sobic006G246200 Sobic006G246200 Sobic009G121600--Sobic006G246200 Sobic003G037100 Sobic003G037100 Sobic009G121600--Sobic003G037100 Sobic001G381300 Sobic001G381300 Sobic009G121600--Sobic001G381300 Sobic001G362001 Sobic001G362001 Sobic009G121600--Sobic001G362001 Sobic010G018300 Sobic010G018300 Sobic009G121600--Sobic010G018300 Sobic005G082700 Sobic005G082700 Sobic009G121600--Sobic005G082700 Sobic009G241500 Sobic009G241500 Sobic009G121600--Sobic009G241500 Sobic009G121600--Sobic009G216050 Sobic001G345400--Sobic003G296300 Sobic001G345400--Sobic004G101000 Sobic001G345400--Sobic009G038000 Sobic001G345400--Sobic005G155600 Sobic001G345400--Sobic006G246100 Sobic004G333300 Sobic004G333300 Sobic001G345400--Sobic004G333300 Sobic001G530350 Sobic001G530350 Sobic001G345400--Sobic001G530350 Sobic001G345400--Sobic009G192100 Sobic001G345400--Sobic008G038100 Sobic003G250600 Sobic003G250600 Sobic002G377100--Sobic003G250600 Sobic001G059400 Sobic001G059400 Sobic002G377100--Sobic001G059400 Sobic003G254900 Sobic003G254900 Sobic002G377100--Sobic003G254900 Sobic003G102200 Sobic003G102200 Sobic002G377100--Sobic003G102200 Sobic002G377100--Sobic001G195100 Sobic010G163000 Sobic010G163000 Sobic002G377100--Sobic010G163000 Sobic001G449700 Sobic001G449700 Sobic002G377100--Sobic001G449700 Sobic004G297100 Sobic004G297100 Sobic002G377100--Sobic004G297100 Sobic002G333400 Sobic002G333400 Sobic002G377100--Sobic002G333400 Sobic001G319100--Sobic009G121600 Sobic001G319100--Sobic009G216050 Sobic001G319100--Sobic006G246200 Sobic001G319100--Sobic005G082700 Sobic008G142100 Sobic008G142100 Sobic001G319100--Sobic008G142100 Sobic001G319100--Sobic004G101000 Sobic009G067400 Sobic009G067400 Sobic001G319100--Sobic009G067400 Sobic006G190000 Sobic006G190000 Sobic001G319100--Sobic006G190000 Sobic001G319100--Sobic001G381300 Sobic010G157500--Sobic003G296300 Sobic009G038200 Sobic009G038200 Sobic010G157500--Sobic009G038200 Sobic010G157500--Sobic006G167800 Sobic003G013600 Sobic003G013600 Sobic010G157500--Sobic003G013600 Sobic003G065600 Sobic003G065600 Sobic010G157500--Sobic003G065600 Sobic002G209100 Sobic002G209100 Sobic010G157500--Sobic002G209100 Sobic010G157500--Sobic008G018600 Sobic004G195800 Sobic004G195800 Sobic010G157500--Sobic004G195800 Sobic010G157500--Sobic001G093900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.