Gene annotation
| Transcriptome id | Sobic.003G383900.1 |
|---|---|
| Synonym | Sb03g042330, MLP423 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) pathogenesis-related Bet v I family protein, putative, expressed |
| UniProt | C5XER0 |
| Pfam | PF00407 |
| Panther DB | PTHR31213 PTHR31213:SF23 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009607; response to biotic stimulus GO:0006952defense response |
Orthologs (automatic annotation)
| TAIR | AT1G24020 : MLP-like protein 423 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g50700.1 : pathogenesis-related Bet v I family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046189 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G192100 | "Belongs to the cytochrome P450 family, up-regulated under all the stress condition"(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Belongs to the cytochrome P450 family(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@cytochrome P450, putative, expressed | - |
| 2 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 3 | Sobic.009G132900 | PPDK(PubMedID : 19549309)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@pyruvate orthophosphate dikinase(PubMedID : 26465154)@phyruvate phosphate dikinase(PubMedID : 26904072)@-(PubMedID : 26976818)@pyruvate, phosphate dikinase, chloroplast precursor, putative, expressed | K01006: pyruvate, orthophosphate dikinase |
| 4 | Sobic.001G448400 | UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed | - |
| 5 | Sobic.010G109500 | expressed protein | - |
| 6 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 7 | Sobic.002G339200 | Chorophyll a/b binding protein(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Light harvesting complex-II subunit B3(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed | K08914: light-harvesting complex II chlorophyll a/b binding protein 3 |
| 8 | Sobic.003G132100 | magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed | K04035: E1.14.13.81, acsF, magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase |
| 9 | Sobic.010G006350 | - | - |
| 10 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.006G264201 | - | K08917: light-harvesting complex II chlorophyll a/b binding protein 6 |
| 12 | Sobic.009G091850 | - | - |
| 13 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 14 | Sobic.002G180400 | isochorismate synthase 1, chloroplast precursor, putative, expressed | K02552: menaquinone-specific isochorismate synthase |
| 15 | Sobic.007G116950 | - | - |
| 16 | Sobic.003G131000 | expressed protein | - |
| 17 | Sobic.007G029300 | acyl-activating enzyme 14, putative, expressed | K14760: acyl-activating enzyme 14 |
| 18 | Sobic.003G057900 | ribosomal protein L5, putative, expressed | - |
| 19 | Sobic.004G238500 | Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed | K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase |
| 20 | Sobic.002G152700 | rhodanese-like, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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