Gene annotation
Transcriptome id Sobic.004G050100.4,Sobic.004G050100.2,Sobic.004G050100.5,Sobic.004G050100.3,Sobic.004G050100.1
Synonym UBQ10, Sb04g004280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin family protein, putative, expressed
UniProt A0A194YMW6
Pfam PF11976
Panther DB PTHR10666 PTHR10666:SF155 PTHR10666 PTHR10666 PTHR10666:SF150
NCBI CDD KOG0005; Ubiquitin-like protein KOG0001Ubiquitin and ubiquitin-like proteins KOG0001Ubiquitin and ubiquitin-like proteins
KEGG Orthology K08770; ubiquitin C K08770ubiquitin C K04551ubiquitin B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05320 : polyubiquitin 10
RAP-DB (Rice) LOC_Os06g46770.1,LOC_Os06g46770.2 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036147 , Zm00025a042947 , Zm00025a042035 , Zm00025a005173 , Zm00025a001454 , Zm00025a050018 , Zm00025a001458 , Zm00025a037444 , Zm00025a039850 , Zm00025a013490
Brachypodium PNT60865 , KQJ91591 , KQJ95133 , KQJ93465 , PNT64330 , KQK04218 , KQK17173 , KQK17147 , PNT77709 , PNT77708 , KQK04197 , KQK17095 , KQK07353 , KQJ89932 , KQK16840 , KQJ93464 , KQJ93343 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.19 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.13 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU7Hr1G103170.10 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU4Hr1G001170.5 , HORVU4Hr1G001170.4 , HORVU7Hr1G113500.1 , HORVU4Hr1G001170.1 , HORVU4Hr1G001170.3 , HORVU4Hr1G001170.2 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU1Hr1G043930.6 , HORVU1Hr1G043930.7 , HORVU1Hr1G043930.4 , HORVU1Hr1G043930.5 , HORVU1Hr1G043930.2 , HORVU1Hr1G043930.3 , HORVU1Hr1G043930.1 , HORVU1Hr1G043930.8 , HORVU1Hr1G043930.9 , HORVU2Hr1G104410.8 , HORVU2Hr1G104410.9 , HORVU2Hr1G104410.1 , HORVU2Hr1G104410.2 , HORVU2Hr1G104410.3 , HORVU2Hr1G104410.4 , HORVU2Hr1G104410.5 , HORVU2Hr1G104410.6 , HORVU2Hr1G104410.7 , HORVU1Hr1G043930.10 , HORVU1Hr1G043930.11 , HORVU6Hr1G020140.9 , HORVU6Hr1G020140.8 , HORVU6Hr1G020140.7 , HORVU6Hr1G020140.6 , HORVU6Hr1G020140.5 , HORVU6Hr1G020140.4 , HORVU6Hr1G020140.3 , HORVU6Hr1G020140.2 , HORVU6Hr1G020140.1 , HORVU5Hr1G072680.1 , HORVU5Hr1G072680.2 , HORVU5Hr1G072680.3 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.3 , HORVU7Hr1G029070.1 , HORVU6Hr1G026260.9 , HORVU2Hr1G104440.3 , HORVU2Hr1G104440.2 , HORVU2Hr1G104440.1 , HORVU2Hr1G104440.7 , HORVU2Hr1G104440.5 , HORVU2Hr1G104440.4 , HORVU7Hr1G102840.9 , HORVU2Hr1G104410.12 , HORVU2Hr1G104410.13 , HORVU2Hr1G104410.10 , HORVU2Hr1G104410.11 , HORVU2Hr1G104410.16 , HORVU2Hr1G104410.17 , HORVU2Hr1G104410.14 , HORVU2Hr1G104410.15 , HORVU2Hr1G104410.18 , HORVU2Hr1G104410.19 , HORVU4Hr1G065100.2 , HORVU4Hr1G065100.3 , HORVU5Hr1G019600.8 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU6Hr1G026260.11 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.4 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU6Hr1G026200.9 , HORVU3Hr1G014150.2 , HORVU3Hr1G014150.3 , HORVU3Hr1G014150.1 , HORVU3Hr1G014150.5 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.5 , HORVU7Hr1G102840.6 , HORVU7Hr1G102840.7 , HORVU6Hr1G026260.8 , HORVU7Hr1G102840.1 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.5 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU7Hr1G102840.8 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.10 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.18 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.14 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.17 , HORVU6Hr1G026200.10 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.12 , HORVU6Hr1G026200.13 , HORVU2Hr1G104410.23 , HORVU2Hr1G104410.22 , HORVU2Hr1G104410.21 , HORVU2Hr1G104410.20 , HORVU2Hr1G104410.26 , HORVU2Hr1G104410.25 , HORVU7Hr1G107010.1 , HORVU6Hr1G026260.21 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.9 , HORVU7Hr1G103330.8 , HORVU7Hr1G103330.5 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.7 , HORVU7Hr1G103330.6 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU4Hr1G040980.1 , HORVU7Hr1G029100.1 , HORVU6Hr1G021700.6 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.2 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.1 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU5Hr1G019590.4 , HORVU7Hr1G103380.1 , HORVU7Hr1G103380.2 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU0Hr1G025670.6 , HORVU0Hr1G025670.7 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.16 , HORVU7Hr1G029150.1 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G029050.2 , HORVU6Hr1G029050.3 , HORVU6Hr1G029050.1 , HORVU6Hr1G029050.7 , HORVU6Hr1G029050.4 , HORVU6Hr1G029050.5 , HORVU6Hr1G029050.8 , HORVU6Hr1G029050.9 , HORVU3Hr1G014180.5 , HORVU3Hr1G014180.1 , HORVU3Hr1G014180.3 , HORVU3Hr1G014180.2 , HORVU6Hr1G026200.21 , HORVU6Hr1G026200.20 , HORVU6Hr1G026200.22 , HORVU2Hr1G104440.6 , HORVU6Hr1G026200.16 , HORVU4Hr1G061900.4 , HORVU4Hr1G061900.2 , HORVU4Hr1G061900.3 , HORVU4Hr1G061900.1 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU2Hr1G104410.24 , HORVU2Hr1G048820.1 , HORVU7Hr1G103170.22 , HORVU7Hr1G103170.20 , HORVU7Hr1G103170.21 , HORVU1Hr1G082070.1 , HORVU6Hr1G014910.1 , HORVU2Hr1G048830.1 , HORVU7Hr1G029150.2 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8 , HORVU6Hr1G016200.1 , HORVU4Hr1G029440.1
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7D02G474200 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS4D02G006900 , TraesCS6B02G148000 , TraesCS7A02G466500 , TraesCS2A02G408500 , TraesCS2D02G405500 , TraesCS2B02G426500 , TraesCS5D02G087500 , TraesCS2A02G458000 , TraesCS6A02G087800 , TraesCS4B02G233100 , TraesCS4B02G233100 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2D02G458600 , TraesCSU02G018500 , TraesCS5B02G080200 , TraesCS4A02G086400 , TraesCS4D02G218400 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS4B02G218100 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS6B02G176000 , TraesCS2D02G458700 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS4B02G008400 , TraesCS6B02G110300 , TraesCS7B02G413800 , TraesCS7A02G453600 , TraesCS6D02G136800 , TraesCS6A02G112400 , TraesCS5D02G269800 , TraesCS6A02G147500 , TraesCS4D02G234300 , TraesCS4D02G234300 , TraesCS7B02G366700 , TraesCS6B02G140600 , TraesCS6D02G248600 , TraesCS4A02G086300 , TraesCS2B02G480300 , TraesCS2B02G480400 , TraesCS7A02G453500 , TraesCSU02G019400 , TraesCS5A02G073800 , TraesCS7D02G494400 , TraesCS6D02G125600 , TraesCS4A02G077000 , TraesCS4A02G077000 , TraesCS2A02G408200 , TraesCS7A02G506300 , TraesCS4B02G218000 , TraesCS5B02G260700 , TraesCS4A02G306500 , TraesCS7A02G487500
Populus PNT59589 , PNT59588 , PNS96748 , PNS96747 , PNS96746 , PNT28506 , PNT13285 , PNT13291 , PNT56763 , PNT59598 , PNT59599 , PNT59596 , PNT59597 , PNT59594 , PNT59595 , PNT59592 , PNT59593 , PNT59590 , PNT59591 , PNT59600


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cDNA sequences
Sobic.004G050100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G062601 - -
2 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.004G183501 - -
4 Sobic.003G280900 NADP-malic enzyme(PubMedID : 26904072)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
5 Sobic.002G035900 glycine-rich protein, putative, expressed K13344: peroxin-13
6 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
7 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
8 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
9 Sobic.003G333400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
11 Sobic.009G111600 expressed protein -
12 Sobic.003G333501 - -
13 Sobic.001G414500 ankyrin repeat-containing protein, putative, expressed -
14 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
15 Sobic.001G106700 expressed protein -
16 Sobic.008G179500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed K07213: ATOX1, ATX1, copZ, copper chaperone
17 Sobic.004G167400 expressed protein -
18 Sobic.007G195100 peptidase, T1 family, putative, expressed K02732: 20S proteasome subunit beta 6
19 Sobic.001G022900 2Fe-2S iron-sulfur cluster binding domain containing protein, expressed K02639: ferredoxin
20 Sobic.004G050000 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B


Gene co-expression network
sample Sobic004G050100 Sobic004G050100 Sobic008G062601 Sobic008G062601 Sobic004G050100--Sobic008G062601 Sobic001G433400 Sobic001G433400 Sobic004G050100--Sobic001G433400 Sobic004G183501 Sobic004G183501 Sobic004G050100--Sobic004G183501 Sobic003G280900 Sobic003G280900 Sobic004G050100--Sobic003G280900 Sobic002G035900 Sobic002G035900 Sobic004G050100--Sobic002G035900 Sobic003G367451 Sobic003G367451 Sobic004G050100--Sobic003G367451 Sobic001G461900 Sobic001G461900 Sobic004G050100--Sobic001G461900 Sobic004G049900 Sobic004G049900 Sobic004G050100--Sobic004G049900 Sobic003G333400 Sobic003G333400 Sobic004G050100--Sobic003G333400 Sobic008G062601--Sobic004G050100 Sobic008G062601--Sobic003G280900 Sobic008G062601--Sobic004G049900 Sobic002G389301 Sobic002G389301 Sobic008G062601--Sobic002G389301 Sobic004G050000 Sobic004G050000 Sobic008G062601--Sobic004G050000 Sobic007G195100 Sobic007G195100 Sobic008G062601--Sobic007G195100 Sobic007G063700 Sobic007G063700 Sobic008G062601--Sobic007G063700 Sobic003G418000 Sobic003G418000 Sobic008G062601--Sobic003G418000 Sobic006G121500 Sobic006G121500 Sobic008G062601--Sobic006G121500 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic002G400000 Sobic002G400000 Sobic001G433400--Sobic002G400000 Sobic001G433400--Sobic003G367451 Sobic009G146100 Sobic009G146100 Sobic001G433400--Sobic009G146100 Sobic009G135600 Sobic009G135600 Sobic001G433400--Sobic009G135600 Sobic003G253000 Sobic003G253000 Sobic001G433400--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic001G433400--Sobic003G220600 Sobic004G327300 Sobic004G327300 Sobic001G433400--Sobic004G327300 Sobic007G186300 Sobic007G186300 Sobic001G433400--Sobic007G186300 Sobic001G073000 Sobic001G073000 Sobic004G183501--Sobic001G073000 Sobic001G415500 Sobic001G415500 Sobic004G183501--Sobic001G415500 Sobic001G022900 Sobic001G022900 Sobic004G183501--Sobic001G022900 Sobic003G117900 Sobic003G117900 Sobic004G183501--Sobic003G117900 Sobic004G183501--Sobic009G146100 Sobic001G007200 Sobic001G007200 Sobic004G183501--Sobic001G007200 Sobic009G228800 Sobic009G228800 Sobic004G183501--Sobic009G228800 Sobic003G370900 Sobic003G370900 Sobic004G183501--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic004G183501--Sobic001G106700 Sobic002G249000 Sobic002G249000 Sobic003G280900--Sobic002G249000 Sobic003G280900--Sobic003G333400 Sobic001G010400 Sobic001G010400 Sobic003G280900--Sobic001G010400 Sobic004G276100 Sobic004G276100 Sobic003G280900--Sobic004G276100 Sobic003G280900--Sobic004G050000 Sobic003G280900--Sobic007G195100 Sobic001G026900 Sobic001G026900 Sobic003G280900--Sobic001G026900 Sobic005G117400 Sobic005G117400 Sobic003G280900--Sobic005G117400 Sobic002G090200 Sobic002G090200 Sobic003G280900--Sobic002G090200 Sobic004G060600 Sobic004G060600 Sobic002G035900--Sobic004G060600 Sobic002G035900--Sobic001G433400 Sobic007G096700 Sobic007G096700 Sobic002G035900--Sobic007G096700 Sobic002G035900--Sobic002G400000 Sobic001G501200 Sobic001G501200 Sobic002G035900--Sobic001G501200 Sobic007G168600 Sobic007G168600 Sobic002G035900--Sobic007G168600 Sobic009G122100 Sobic009G122100 Sobic002G035900--Sobic009G122100 Sobic003G077900 Sobic003G077900 Sobic002G035900--Sobic003G077900 Sobic002G035900--Sobic003G367451 Sobic003G367451--Sobic004G327300 Sobic001G236300 Sobic001G236300 Sobic003G367451--Sobic001G236300 Sobic007G114200 Sobic007G114200 Sobic003G367451--Sobic007G114200 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G367451--Sobic003G253000 Sobic003G367451--Sobic003G220600 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic001G461900--Sobic007G096700 Sobic004G049900--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic004G049900--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic004G049900--Sobic006G108400 Sobic003G130800 Sobic003G130800 Sobic004G049900--Sobic003G130800 Sobic001G459200 Sobic001G459200 Sobic004G049900--Sobic001G459200 Sobic004G049900--Sobic004G050000 Sobic004G049900--Sobic001G415500 Sobic002G267500 Sobic002G267500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic003G333400--Sobic007G195100 Sobic003G333400--Sobic009G146100 Sobic002G180600 Sobic002G180600 Sobic003G333400--Sobic002G180600 Sobic008G179500 Sobic008G179500 Sobic003G333400--Sobic008G179500 Sobic003G333400--Sobic004G276100 Sobic004G277000 Sobic004G277000 Sobic003G333400--Sobic004G277000 Sobic003G333400--Sobic002G249000 Sobic003G333400--Sobic004G050000 Sobic003G333400--Sobic003G253000
Octagon: transcription factors


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