Gene annotation
Transcriptome id Sobic.004G116900.2,Sobic.004G116900.4,Sobic.004G116900.3,Sobic.004G116900.1
Synonym TRZ1, Sb04g009740, NUZ
Functional annotation nuclear ribonuclease Z, putative, expressed
UniProt A0A194YP20 , C5XZI2 , A0A1Z5RMY9 , A0A1Z5RMP6
Pfam PF12706
Panther DB PTHR12553 PTHR12553:SF43
NCBI CDD -
KEGG Orthology K00784; ribonuclease Z
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74700 : tRNAse Z1
RAP-DB (Rice) LOC_Os02g12290.1 : nuclear ribonuclease Z, putative, expressed
MaizeGDB (Corn) Zm00025a034382
Brachypodium KQJ94023 , PNT74487 , KQJ94024
Barley HORVU6Hr1G038620.12 , HORVU6Hr1G038620.11 , HORVU6Hr1G038620.10 , HORVU6Hr1G038620.9 , HORVU6Hr1G038620.8 , HORVU6Hr1G038620.7
Wheat TraesCS6D02G170400 , TraesCS6B02G211800 , TraesCS6B02G211800 , TraesCS6B02G211800 , TraesCS6A02G184600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G123800 - -
2 Sobic.002G288700 - K02711: photosystem II PsbJ protein
3 Sobic.007G223250 - -
4 Sobic.001G266000 OsClp10 - Putative Clp protease homologue, expressed -
5 Sobic.005G146900 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.002G014900 OsFBD13 - F-box and FBD domain containing protein, expressed -
7 Sobic.003G173266 - K02956: RP-S15, MRPS15, small subunit ribosomal protein S15
8 Sobic.001G490200 nucleoside-triphosphatase, putative, expressed -
9 Sobic.002G222000 - -
10 Sobic.002G150032 - -
11 Sobic.003G172900 NADPH-dependent oxidoreductase, putative, expressed K05581: NAD(P)H-quinone oxidoreductase subunit J
12 Sobic.010G008433 - -
13 Sobic.004G087000 ATP synthase subunit beta, putative, expressed K02112: ATPF1B, F-type H+/Na+-transporting ATPase subunit beta
14 Sobic.002G148166 - -
15 Sobic.002G149966 - -
16 Sobic.004G251400 - -
17 Sobic.007G109200 ATP synthase epsilon chain, putative, expressed K02114: ATPF1E, F-type H+-transporting ATPase subunit epsilon
18 Sobic.003G172850 - K03043: DNA-directed RNA polymerase subunit beta
19 Sobic.010G254000 cycloartenol synthase, putative, expressed K19011: achilleol B synthase
20 Sobic.004G198701 - -


Gene co-expression network
sample Sobic004G116900 Sobic004G116900 Sobic006G123800 Sobic006G123800 Sobic004G116900--Sobic006G123800 Sobic002G288700 Sobic002G288700 Sobic004G116900--Sobic002G288700 Sobic007G223250 Sobic007G223250 Sobic004G116900--Sobic007G223250 Sobic001G266000 Sobic001G266000 Sobic004G116900--Sobic001G266000 Sobic005G146900 Sobic005G146900 Sobic004G116900--Sobic005G146900 Sobic002G014900 Sobic002G014900 Sobic004G116900--Sobic002G014900 Sobic003G173266 Sobic003G173266 Sobic004G116900--Sobic003G173266 Sobic001G490200 Sobic001G490200 Sobic004G116900--Sobic001G490200 Sobic002G222000 Sobic002G222000 Sobic004G116900--Sobic002G222000 Sobic006G123800--Sobic001G266000 Sobic006G123800--Sobic003G173266 Sobic006G123800--Sobic002G288700 Sobic003G172850 Sobic003G172850 Sobic006G123800--Sobic003G172850 Sobic003G172900 Sobic003G172900 Sobic006G123800--Sobic003G172900 Sobic006G123800--Sobic002G014900 Sobic002G150032 Sobic002G150032 Sobic006G123800--Sobic002G150032 Sobic004G251400 Sobic004G251400 Sobic006G123800--Sobic004G251400 Sobic006G123800--Sobic007G223250 Sobic002G288700--Sobic007G223250 Sobic002G288700--Sobic006G123800 Sobic004G087000 Sobic004G087000 Sobic002G288700--Sobic004G087000 Sobic002G288700--Sobic003G173266 Sobic002G288700--Sobic001G266000 Sobic002G288700--Sobic002G014900 Sobic007G109200 Sobic007G109200 Sobic002G288700--Sobic007G109200 Sobic002G288700--Sobic003G172900 Sobic002G288700--Sobic004G251400 Sobic007G223250--Sobic002G288700 Sobic007G223250--Sobic002G014900 Sobic007G223250--Sobic004G087000 Sobic007G223250--Sobic006G123800 Sobic007G223250--Sobic001G266000 Sobic007G223250--Sobic002G150032 Sobic007G223250--Sobic003G172900 Sobic007G223250--Sobic004G251400 Sobic007G223250--Sobic007G109200 Sobic001G266000--Sobic002G150032 Sobic001G266000--Sobic003G172900 Sobic002G149966 Sobic002G149966 Sobic001G266000--Sobic002G149966 Sobic001G266000--Sobic003G172850 Sobic001G266000--Sobic003G173266 Sobic001G266000--Sobic002G014900 Sobic002G044500 Sobic002G044500 Sobic001G266000--Sobic002G044500 Sobic001G266000--Sobic002G222000 Sobic001G266000--Sobic006G123800 Sobic005G146900--Sobic006G123800 Sobic005G146900--Sobic002G288700 Sobic001G150901 Sobic001G150901 Sobic005G146900--Sobic001G150901 Sobic005G146900--Sobic007G223250 Sobic001G059150 Sobic001G059150 Sobic005G146900--Sobic001G059150 Sobic003G354166 Sobic003G354166 Sobic005G146900--Sobic003G354166 Sobic005G146900--Sobic001G266000 Sobic010G214950 Sobic010G214950 Sobic005G146900--Sobic010G214950 Sobic005G146900--Sobic002G014900 Sobic002G014900--Sobic002G150032 Sobic002G014900--Sobic001G266000 Sobic002G014900--Sobic002G149966 Sobic002G014900--Sobic003G172900 Sobic002G014900--Sobic003G172850 Sobic002G014900--Sobic002G044500 Sobic006G124850 Sobic006G124850 Sobic002G014900--Sobic006G124850 Sobic002G014900--Sobic004G251400 Sobic003G290050 Sobic003G290050 Sobic002G014900--Sobic003G290050 Sobic003G169300 Sobic003G169300 Sobic003G173266--Sobic003G169300 Sobic003G173266--Sobic003G172900 Sobic003G173266--Sobic003G172850 Sobic003G173266--Sobic001G266000 Sobic003G173266--Sobic004G251400 Sobic003G173266--Sobic002G222000 Sobic005G110493 Sobic005G110493 Sobic003G173266--Sobic005G110493 Sobic002G148166 Sobic002G148166 Sobic003G173266--Sobic002G148166 Sobic010G052866 Sobic010G052866 Sobic003G173266--Sobic010G052866 Sobic002G423901 Sobic002G423901 Sobic001G490200--Sobic002G423901 Sobic001G490200--Sobic002G288700 Sobic001G490200--Sobic004G116900 Sobic001G490200--Sobic007G223250 Sobic001G060732 Sobic001G060732 Sobic001G490200--Sobic001G060732 Sobic001G490200--Sobic001G150901 Sobic001G490200--Sobic001G059150 Sobic001G234733 Sobic001G234733 Sobic001G490200--Sobic001G234733 Sobic010G008433 Sobic010G008433 Sobic001G490200--Sobic010G008433 Sobic002G222000--Sobic003G172900 Sobic002G222000--Sobic002G148166 Sobic010G254000 Sobic010G254000 Sobic002G222000--Sobic010G254000 Sobic002G222000--Sobic003G173266 Sobic002G222000--Sobic001G266000 Sobic005G002050 Sobic005G002050 Sobic002G222000--Sobic005G002050 Sobic002G222000--Sobic003G169300 Sobic002G222000--Sobic005G110493 Sobic003G130200 Sobic003G130200 Sobic002G222000--Sobic003G130200
Octagon: transcription factors


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