Gene annotation
Transcriptome id Sobic.004G122600.1,Sobic.004G122600.2
Synonym Sb04g010220
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A194YP54 , C5XZZ2
Pfam PF03127 PF00790
Panther DB PTHR13856 PTHR13856:SF78
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT4G32760 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os02g17350.2,LOC_Os02g17350.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019834
Brachypodium KQK03409 , KQJ94375 , KQJ94374 , PNT70205
Barley HORVU3Hr1G031360.2 , HORVU3Hr1G031360.4 , HORVU3Hr1G031360.6 , HORVU3Hr1G031360.9 , HORVU3Hr1G031360.10 , HORVU3Hr1G031360.11
Wheat TraesCS3A02G154000 , TraesCS3A02G154000 , TraesCS3D02G161400 , TraesCS3D02G161400 , TraesCS3B02G180600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G382000 AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed K04688: ribosomal protein S6 kinase beta
2 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
3 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
4 Sobic.001G481800 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
5 Sobic.003G173600 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
6 Sobic.007G201500 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
7 Sobic.008G070500 GTP binding protein, putative, expressed -
8 Sobic.001G355800 methyltransferase, putative, expressed -
9 Sobic.006G002000 phosphoglycerate mutase, putative, expressed -
10 Sobic.006G082400 expressed protein -
11 Sobic.010G138000 FAD binding domain of DNA photolyase domain containing protein, expressed K12119: cryptochrome 2
12 Sobic.003G412700 serine palmitoyltransferase 2, putative, expressed K00654: serine palmitoyltransferase
13 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein
14 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
15 Sobic.001G002000 protein kinase domain containing protein, expressed -
16 Sobic.003G086900 C2 domain containing protein, putative, expressed -
17 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
18 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.001G137100 homeodomain protein, putative, expressed -
20 Sobic.001G114000 expressed protein -


Gene co-expression network
sample Sobic004G122600 Sobic004G122600 Sobic001G382000 Sobic001G382000 Sobic004G122600--Sobic001G382000 Sobic003G365300 Sobic003G365300 Sobic004G122600--Sobic003G365300 Sobic010G205800 Sobic010G205800 Sobic004G122600--Sobic010G205800 Sobic001G481800 Sobic001G481800 Sobic004G122600--Sobic001G481800 Sobic003G173600 Sobic003G173600 Sobic004G122600--Sobic003G173600 Sobic007G201500 Sobic007G201500 Sobic004G122600--Sobic007G201500 Sobic008G070500 Sobic008G070500 Sobic004G122600--Sobic008G070500 Sobic001G355800 Sobic001G355800 Sobic004G122600--Sobic001G355800 Sobic006G002000 Sobic006G002000 Sobic004G122600--Sobic006G002000 Sobic001G137100 Sobic001G137100 Sobic001G382000--Sobic001G137100 Sobic006G087700 Sobic006G087700 Sobic001G382000--Sobic006G087700 Sobic009G249200 Sobic009G249200 Sobic001G382000--Sobic009G249200 Sobic007G024700 Sobic007G024700 Sobic001G382000--Sobic007G024700 Sobic009G094300 Sobic009G094300 Sobic001G382000--Sobic009G094300 Sobic003G109100 Sobic003G109100 Sobic001G382000--Sobic003G109100 Sobic004G052900 Sobic004G052900 Sobic001G382000--Sobic004G052900 Sobic001G373200 Sobic001G373200 Sobic001G382000--Sobic001G373200 Sobic001G382000--Sobic008G070500 Sobic001G390800 Sobic001G390800 Sobic003G365300--Sobic001G390800 Sobic003G365300--Sobic006G002000 Sobic006G082400 Sobic006G082400 Sobic003G365300--Sobic006G082400 Sobic004G275700 Sobic004G275700 Sobic003G365300--Sobic004G275700 Sobic002G111000 Sobic002G111000 Sobic003G365300--Sobic002G111000 Sobic001G203900 Sobic001G203900 Sobic003G365300--Sobic001G203900 Sobic009G068500 Sobic009G068500 Sobic003G365300--Sobic009G068500 Sobic003G006300 Sobic003G006300 Sobic003G365300--Sobic003G006300 Sobic001G107600 Sobic001G107600 Sobic003G365300--Sobic001G107600 Sobic001G121200 Sobic001G121200 Sobic010G205800--Sobic001G121200 Sobic010G205800--Sobic001G390800 Sobic001G124200 Sobic001G124200 Sobic010G205800--Sobic001G124200 Sobic001G007000 Sobic001G007000 Sobic010G205800--Sobic001G007000 Sobic001G000200 Sobic001G000200 Sobic010G205800--Sobic001G000200 Sobic002G262900 Sobic002G262900 Sobic010G205800--Sobic002G262900 Sobic004G274200 Sobic004G274200 Sobic010G205800--Sobic004G274200 Sobic006G199200 Sobic006G199200 Sobic010G205800--Sobic006G199200 Sobic001G079200 Sobic001G079200 Sobic010G205800--Sobic001G079200 Sobic003G220800 Sobic003G220800 Sobic001G481800--Sobic003G220800 Sobic009G201300 Sobic009G201300 Sobic001G481800--Sobic009G201300 Sobic003G354600 Sobic003G354600 Sobic001G481800--Sobic003G354600 Sobic003G119600 Sobic003G119600 Sobic001G481800--Sobic003G119600 Sobic009G239200 Sobic009G239200 Sobic001G481800--Sobic009G239200 Sobic004G034800 Sobic004G034800 Sobic001G481800--Sobic004G034800 Sobic002G167500 Sobic002G167500 Sobic001G481800--Sobic002G167500 Sobic001G136800 Sobic001G136800 Sobic001G481800--Sobic001G136800 Sobic003G086900 Sobic003G086900 Sobic001G481800--Sobic003G086900 Sobic007G162100 Sobic007G162100 Sobic003G173600--Sobic007G162100 Sobic003G264100 Sobic003G264100 Sobic003G173600--Sobic003G264100 Sobic006G180000 Sobic006G180000 Sobic003G173600--Sobic006G180000 Sobic003G173600--Sobic002G262900 Sobic004G028100 Sobic004G028100 Sobic003G173600--Sobic004G028100 Sobic010G020400 Sobic010G020400 Sobic003G173600--Sobic010G020400 Sobic010G223300 Sobic010G223300 Sobic003G173600--Sobic010G223300 Sobic002G303600 Sobic002G303600 Sobic003G173600--Sobic002G303600 Sobic003G243700 Sobic003G243700 Sobic003G173600--Sobic003G243700 Sobic001G073500 Sobic001G073500 Sobic007G201500--Sobic001G073500 Sobic006G222600 Sobic006G222600 Sobic007G201500--Sobic006G222600 Sobic010G210500 Sobic010G210500 Sobic007G201500--Sobic010G210500 Sobic001G375100 Sobic001G375100 Sobic007G201500--Sobic001G375100 Sobic010G205100 Sobic010G205100 Sobic007G201500--Sobic010G205100 Sobic002G305000 Sobic002G305000 Sobic007G201500--Sobic002G305000 Sobic010G176200 Sobic010G176200 Sobic007G201500--Sobic010G176200 Sobic007G201500--Sobic003G354600 Sobic008G130000 Sobic008G130000 Sobic007G201500--Sobic008G130000 Sobic001G309400 Sobic001G309400 Sobic008G070500--Sobic001G309400 Sobic008G070500--Sobic004G052900 Sobic002G340100 Sobic002G340100 Sobic008G070500--Sobic002G340100 Sobic001G114000 Sobic001G114000 Sobic008G070500--Sobic001G114000 Sobic008G070500--Sobic010G205800 Sobic008G070500--Sobic004G274200 Sobic003G443100 Sobic003G443100 Sobic008G070500--Sobic003G443100 Sobic001G166600 Sobic001G166600 Sobic008G070500--Sobic001G166600 Sobic008G070500--Sobic009G094300 Sobic002G131200 Sobic002G131200 Sobic001G355800--Sobic002G131200 Sobic001G192000 Sobic001G192000 Sobic001G355800--Sobic001G192000 Sobic001G333100 Sobic001G333100 Sobic001G355800--Sobic001G333100 Sobic001G355800--Sobic009G201300 Sobic001G355800--Sobic003G354600 Sobic001G355800--Sobic002G305000 Sobic003G311900 Sobic003G311900 Sobic001G355800--Sobic003G311900 Sobic001G355800--Sobic003G119600 Sobic002G091600 Sobic002G091600 Sobic001G355800--Sobic002G091600 Sobic006G002000--Sobic003G365300 Sobic010G139600 Sobic010G139600 Sobic006G002000--Sobic010G139600 Sobic007G133700 Sobic007G133700 Sobic006G002000--Sobic007G133700 Sobic006G002000--Sobic003G006300 Sobic008G098900 Sobic008G098900 Sobic006G002000--Sobic008G098900 Sobic007G075400 Sobic007G075400 Sobic006G002000--Sobic007G075400 Sobic010G072400 Sobic010G072400 Sobic006G002000--Sobic010G072400 Sobic006G002000--Sobic006G087700 Sobic003G198800 Sobic003G198800 Sobic006G002000--Sobic003G198800
Octagon: transcription factors


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