Gene annotation
Transcriptome id Sobic.004G132600.1
Synonym ATCPNIFS, CPNIFS, ATNFS2, SUFS, ATSUFS, Sb04g012430
Functional annotation aminotransferase, putative, expressed
UniProt C5Y0K0
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF17
NCBI CDD KOG1549; Cysteine desulfurase NFS1
KEGG Orthology K11717; cysteine desulfurase / selenocysteine lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08490 : chloroplastic NIFS-like cysteine desulfurase
RAP-DB (Rice) LOC_Os12g18900.1 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a033319
Brachypodium KQJ89436
Barley HORVU4Hr1G023100.30 , HORVU4Hr1G023100.31 , HORVU4Hr1G023100.32 , HORVU4Hr1G023100.33
Wheat TraesCS4D02G120100 , TraesCS4B02G122000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G125200 - -
2 Sobic.005G183400 resistance protein, putative, expressed -
3 Sobic.009G029001 - -
4 Sobic.002G064000 expressed protein -
5 Sobic.004G071800 - -
6 Sobic.004G118900 - -
7 Sobic.006G147300 -(PubMedID : 26465154)@expressed protein -
8 Sobic.004G343300 -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein -
9 Sobic.004G214900 receptor kinase, putative, expressed -
10 Sobic.008G026700 expressed protein -
11 Sobic.003G052500 Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed K02699: photosystem I subunit XI
12 Sobic.007G071500 photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
13 Sobic.006G234100 shikimate/quinate 5-dehydrogenase, putative, expressed K02492: glutamyl-tRNA reductase
14 Sobic.007G207800 thylakoid lumen protein, chloroplast precursor, putative, expressed -
15 Sobic.001G448400 UbiE/COQ5 methyltransferase family protein (Sb)(PubMedID : 27208977)@methyltransferase domain containing protein, putative, expressed -
16 Sobic.002G033800 expressed protein -
17 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
18 Sobic.003G209900 Chorophyll a/b binding protein 2(PubMedID : 26186930)@Chlorophyll a/b-binding protein(PubMedID : 26317421)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
19 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
20 Sobic.002G180400 isochorismate synthase 1, chloroplast precursor, putative, expressed K02552: menaquinone-specific isochorismate synthase


Gene co-expression network
sample Sobic004G132600 Sobic004G132600 Sobic004G125200 Sobic004G125200 Sobic004G132600--Sobic004G125200 Sobic005G183400 Sobic005G183400 Sobic004G132600--Sobic005G183400 Sobic009G029001 Sobic009G029001 Sobic004G132600--Sobic009G029001 Sobic002G064000 Sobic002G064000 Sobic004G132600--Sobic002G064000 Sobic004G071800 Sobic004G071800 Sobic004G132600--Sobic004G071800 Sobic004G118900 Sobic004G118900 Sobic004G132600--Sobic004G118900 Sobic006G147300 Sobic006G147300 Sobic004G132600--Sobic006G147300 Sobic004G343300 Sobic004G343300 Sobic004G132600--Sobic004G343300 Sobic004G214900 Sobic004G214900 Sobic004G132600--Sobic004G214900 Sobic004G125200--Sobic004G214900 Sobic004G125200--Sobic004G071800 Sobic004G125200--Sobic004G132600 Sobic004G125200--Sobic002G064000 Sobic004G125200--Sobic006G147300 Sobic004G125200--Sobic005G183400 Sobic004G026700 Sobic004G026700 Sobic004G125200--Sobic004G026700 Sobic004G272600 Sobic004G272600 Sobic004G125200--Sobic004G272600 Sobic003G097800 Sobic003G097800 Sobic004G125200--Sobic003G097800 Sobic005G183400--Sobic004G214900 Sobic002G211000 Sobic002G211000 Sobic005G183400--Sobic002G211000 Sobic005G183400--Sobic006G147300 Sobic005G183400--Sobic004G125200 Sobic006G272900 Sobic006G272900 Sobic005G183400--Sobic006G272900 Sobic007G034300 Sobic007G034300 Sobic005G183400--Sobic007G034300 Sobic007G071500 Sobic007G071500 Sobic005G183400--Sobic007G071500 Sobic005G183400--Sobic009G029001 Sobic004G051100 Sobic004G051100 Sobic005G183400--Sobic004G051100 Sobic009G029001--Sobic002G211000 Sobic007G207800 Sobic007G207800 Sobic009G029001--Sobic007G207800 Sobic009G029001--Sobic005G183400 Sobic001G242600 Sobic001G242600 Sobic009G029001--Sobic001G242600 Sobic004G227200 Sobic004G227200 Sobic009G029001--Sobic004G227200 Sobic007G223500 Sobic007G223500 Sobic009G029001--Sobic007G223500 Sobic009G029001--Sobic004G132600 Sobic001G517700 Sobic001G517700 Sobic009G029001--Sobic001G517700 Sobic007G053800 Sobic007G053800 Sobic009G029001--Sobic007G053800 Sobic002G064000--Sobic004G071800 Sobic002G064000--Sobic004G272600 Sobic001G274600 Sobic001G274600 Sobic002G064000--Sobic001G274600 Sobic003G052500 Sobic003G052500 Sobic002G064000--Sobic003G052500 Sobic001G070500 Sobic001G070500 Sobic002G064000--Sobic001G070500 Sobic002G064000--Sobic006G147300 Sobic002G064000--Sobic004G026700 Sobic001G463200 Sobic001G463200 Sobic002G064000--Sobic001G463200 Sobic006G073500 Sobic006G073500 Sobic002G064000--Sobic006G073500 Sobic004G071800--Sobic001G274600 Sobic003G209800 Sobic003G209800 Sobic004G071800--Sobic003G209800 Sobic004G071800--Sobic004G272600 Sobic004G071800--Sobic003G052500 Sobic008G038300 Sobic008G038300 Sobic004G071800--Sobic008G038300 Sobic004G071800--Sobic006G073500 Sobic004G071800--Sobic002G064000 Sobic002G033900 Sobic002G033900 Sobic004G071800--Sobic002G033900 Sobic004G071800--Sobic001G070500 Sobic004G118900--Sobic004G214900 Sobic008G026700 Sobic008G026700 Sobic004G118900--Sobic008G026700 Sobic004G118900--Sobic004G132600 Sobic004G118900--Sobic005G183400 Sobic010G127300 Sobic010G127300 Sobic004G118900--Sobic010G127300 Sobic004G118900--Sobic004G125200 Sobic010G208800 Sobic010G208800 Sobic004G118900--Sobic010G208800 Sobic004G118900--Sobic006G147300 Sobic004G118900--Sobic009G029001 Sobic006G147300--Sobic007G207800 Sobic008G066100 Sobic008G066100 Sobic006G147300--Sobic008G066100 Sobic003G359100 Sobic003G359100 Sobic006G147300--Sobic003G359100 Sobic002G030500 Sobic002G030500 Sobic006G147300--Sobic002G030500 Sobic004G035500 Sobic004G035500 Sobic006G147300--Sobic004G035500 Sobic002G098800 Sobic002G098800 Sobic006G147300--Sobic002G098800 Sobic003G199800 Sobic003G199800 Sobic006G147300--Sobic003G199800 Sobic006G147300--Sobic004G272600 Sobic003G435800 Sobic003G435800 Sobic006G147300--Sobic003G435800 Sobic004G249800 Sobic004G249800 Sobic004G343300--Sobic004G249800 Sobic003G132100 Sobic003G132100 Sobic004G343300--Sobic003G132100 Sobic006G105900 Sobic006G105900 Sobic004G343300--Sobic006G105900 Sobic001G448400 Sobic001G448400 Sobic004G343300--Sobic001G448400 Sobic004G343300--Sobic007G071500 Sobic010G241000 Sobic010G241000 Sobic004G343300--Sobic010G241000 Sobic006G234100 Sobic006G234100 Sobic004G343300--Sobic006G234100 Sobic004G175500 Sobic004G175500 Sobic004G343300--Sobic004G175500 Sobic002G033800 Sobic002G033800 Sobic004G343300--Sobic002G033800 Sobic004G214900--Sobic004G125200 Sobic004G214900--Sobic005G183400 Sobic004G214900--Sobic004G118900 Sobic009G244300 Sobic009G244300 Sobic004G214900--Sobic009G244300 Sobic004G214900--Sobic007G034300 Sobic001G068301 Sobic001G068301 Sobic004G214900--Sobic001G068301 Sobic004G214900--Sobic006G147300 Sobic003G231800 Sobic003G231800 Sobic004G214900--Sobic003G231800 Sobic004G214900--Sobic004G132600
Octagon: transcription factors


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