Gene annotation
Transcriptome id Sobic.004G202300.1
Synonym EIF4B1, Sb04g024860
Functional annotation eukaryotic translation initiation factor 4B, putative, expressed
UniProt C5XWJ9
Pfam PF06273
Panther DB PTHR32091 PTHR32091:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G26400 : eukaryotic translation initiation factor 4B1
RAP-DB (Rice) LOC_Os02g38220.1 : eukaryotic translation initiation factor 4B, putative, expressed
MaizeGDB (Corn) Zm00025a056308 , Zm00025a021310
Brachypodium KQK00164
Barley -
Wheat TraesCS2D02G337300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G202300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G023100 heat shock protein DnaJ, putative, expressed -
2 Sobic.003G346500 similar to Nuclear transcription factor Y subunit B-3(PubMedID : 29862293)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K08065: NFYB, nuclear transcription Y subunit beta
3 Sobic.002G294100 DOMON domain containing protein, expressed -
4 Sobic.003G036500 fruit protein PKIWI502, putative, expressed -
5 Sobic.004G186300 protein phosphotase protein, putative, expressed -
6 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
7 Sobic.001G122000 oxysterol-binding protein, putative, expressed -
8 Sobic.003G043800 BT1 family protein, putative, expressed -
9 Sobic.002G291600 - -
10 Sobic.009G122500 expressed protein -
11 Sobic.003G190600 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
12 Sobic.004G337300 expressed protein -
13 Sobic.006G222500 expressed protein -
14 Sobic.010G253400 AIG2-like family domain containing protein, expressed -
15 Sobic.004G207900 nucleotide-sugar transporter family protein, putative, expressed -
16 Sobic.001G155200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
17 Sobic.009G218000 VIP1 protein, putative, expressed -
18 Sobic.003G392550 - -
19 Sobic.002G373600 von Willebrand factor type A domain containing protein, expressed -
20 Sobic.001G378200 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic004G202300 Sobic004G202300 Sobic002G023100 Sobic002G023100 Sobic004G202300--Sobic002G023100 Sobic003G346500 Sobic003G346500 Sobic004G202300--Sobic003G346500 Sobic002G294100 Sobic002G294100 Sobic004G202300--Sobic002G294100 Sobic003G036500 Sobic003G036500 Sobic004G202300--Sobic003G036500 Sobic004G186300 Sobic004G186300 Sobic004G202300--Sobic004G186300 Sobic005G017200 Sobic005G017200 Sobic004G202300--Sobic005G017200 Sobic001G122000 Sobic001G122000 Sobic004G202300--Sobic001G122000 Sobic003G043800 Sobic003G043800 Sobic004G202300--Sobic003G043800 Sobic002G291600 Sobic002G291600 Sobic004G202300--Sobic002G291600 Sobic003G190600 Sobic003G190600 Sobic002G023100--Sobic003G190600 Sobic003G160500 Sobic003G160500 Sobic002G023100--Sobic003G160500 Sobic003G305900 Sobic003G305900 Sobic002G023100--Sobic003G305900 Sobic007G158900 Sobic007G158900 Sobic002G023100--Sobic007G158900 Sobic001G061200 Sobic001G061200 Sobic002G023100--Sobic001G061200 Sobic009G050500 Sobic009G050500 Sobic002G023100--Sobic009G050500 Sobic003G058500 Sobic003G058500 Sobic002G023100--Sobic003G058500 Sobic010G181600 Sobic010G181600 Sobic002G023100--Sobic010G181600 Sobic004G141400 Sobic004G141400 Sobic002G023100--Sobic004G141400 Sobic004G101500 Sobic004G101500 Sobic003G346500--Sobic004G101500 Sobic003G346500--Sobic004G186300 Sobic010G253400 Sobic010G253400 Sobic003G346500--Sobic010G253400 Sobic006G222500 Sobic006G222500 Sobic003G346500--Sobic006G222500 Sobic008G140400 Sobic008G140400 Sobic003G346500--Sobic008G140400 Sobic007G148400 Sobic007G148400 Sobic003G346500--Sobic007G148400 Sobic003G270100 Sobic003G270100 Sobic003G346500--Sobic003G270100 Sobic007G140600 Sobic007G140600 Sobic003G346500--Sobic007G140600 Sobic001G408400 Sobic001G408400 Sobic003G346500--Sobic001G408400 Sobic007G005500 Sobic007G005500 Sobic002G294100--Sobic007G005500 Sobic004G100200 Sobic004G100200 Sobic002G294100--Sobic004G100200 Sobic004G207900 Sobic004G207900 Sobic002G294100--Sobic004G207900 Sobic004G241900 Sobic004G241900 Sobic002G294100--Sobic004G241900 Sobic009G077600 Sobic009G077600 Sobic002G294100--Sobic009G077600 Sobic001G449900 Sobic001G449900 Sobic002G294100--Sobic001G449900 Sobic002G294100--Sobic003G036500 Sobic001G431000 Sobic001G431000 Sobic002G294100--Sobic001G431000 Sobic002G238400 Sobic002G238400 Sobic002G294100--Sobic002G238400 Sobic006G203300 Sobic006G203300 Sobic003G036500--Sobic006G203300 Sobic004G254800 Sobic004G254800 Sobic003G036500--Sobic004G254800 Sobic010G169900 Sobic010G169900 Sobic003G036500--Sobic010G169900 Sobic009G122500 Sobic009G122500 Sobic003G036500--Sobic009G122500 Sobic003G409900 Sobic003G409900 Sobic003G036500--Sobic003G409900 Sobic004G263500 Sobic004G263500 Sobic003G036500--Sobic004G263500 Sobic009G128500 Sobic009G128500 Sobic003G036500--Sobic009G128500 Sobic006G060000 Sobic006G060000 Sobic003G036500--Sobic006G060000 Sobic003G036500--Sobic004G100200 Sobic004G186300--Sobic006G222500 Sobic004G186300--Sobic003G270100 Sobic006G219900 Sobic006G219900 Sobic004G186300--Sobic006G219900 Sobic003G308300 Sobic003G308300 Sobic004G186300--Sobic003G308300 Sobic004G186300--Sobic007G148400 Sobic004G186300--Sobic010G253400 Sobic007G218600 Sobic007G218600 Sobic004G186300--Sobic007G218600 Sobic004G186300--Sobic001G408400 Sobic004G186300--Sobic003G346500 Sobic003G314300 Sobic003G314300 Sobic005G017200--Sobic003G314300 Sobic001G097500 Sobic001G097500 Sobic005G017200--Sobic001G097500 Sobic001G356100 Sobic001G356100 Sobic005G017200--Sobic001G356100 Sobic005G017200--Sobic009G128500 Sobic005G114500 Sobic005G114500 Sobic005G017200--Sobic005G114500 Sobic001G193100 Sobic001G193100 Sobic005G017200--Sobic001G193100 Sobic004G078700 Sobic004G078700 Sobic005G017200--Sobic004G078700 Sobic002G290100 Sobic002G290100 Sobic005G017200--Sobic002G290100 Sobic003G230600 Sobic003G230600 Sobic005G017200--Sobic003G230600 Sobic001G122000--Sobic001G193100 Sobic003G270600 Sobic003G270600 Sobic001G122000--Sobic003G270600 Sobic001G122000--Sobic008G140400 Sobic004G236200 Sobic004G236200 Sobic001G122000--Sobic004G236200 Sobic004G228800 Sobic004G228800 Sobic001G122000--Sobic004G228800 Sobic003G394200 Sobic003G394200 Sobic001G122000--Sobic003G394200 Sobic002G431000 Sobic002G431000 Sobic001G122000--Sobic002G431000 Sobic007G173700 Sobic007G173700 Sobic001G122000--Sobic007G173700 Sobic001G005600 Sobic001G005600 Sobic001G122000--Sobic001G005600 Sobic006G217300 Sobic006G217300 Sobic003G043800--Sobic006G217300 Sobic001G122500 Sobic001G122500 Sobic003G043800--Sobic001G122500 Sobic010G026300 Sobic010G026300 Sobic003G043800--Sobic010G026300 Sobic004G124500 Sobic004G124500 Sobic003G043800--Sobic004G124500 Sobic003G043800--Sobic004G207900 Sobic001G378200 Sobic001G378200 Sobic003G043800--Sobic001G378200 Sobic006G207900 Sobic006G207900 Sobic003G043800--Sobic006G207900 Sobic006G055400 Sobic006G055400 Sobic003G043800--Sobic006G055400 Sobic005G207400 Sobic005G207400 Sobic003G043800--Sobic005G207400 Sobic002G291600--Sobic003G190600 Sobic002G291600--Sobic002G023100 Sobic002G291600--Sobic004G141400 Sobic002G291600--Sobic009G050500 Sobic002G291600--Sobic010G181600 Sobic004G218300 Sobic004G218300 Sobic002G291600--Sobic004G218300 Sobic010G243400 Sobic010G243400 Sobic002G291600--Sobic010G243400 Sobic002G291600--Sobic007G158900 Sobic002G291600--Sobic001G378200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.